RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1136505", tax_clade = "Stenosarchaea group" and tax_kingdom = "Methanobacteriati"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Methanobacteriati · 4 ✖

tax_clade 1

  • Stenosarchaea group · 4 ✖

bioproject 1

  • PRJNA1136505 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20685873 20685873 PRJNA1136505_P_NODE_133617_length_250_cov_0.870056_g126757_i0 PRJNA1136505 133617 250 0.870056 2.17514 Haloplanus aerogenes 660522 Archaea Archaea 60.2 1.35e-4   NTclustered gi|1526250537|gb|CP034145.1| 660522 g126757 i0 100 3.048 32 0 13 0 89 120 1142122 1142091 Haloplanus aerogenes strain JCM 16430 chromosome, complete genome blastn 762 60.2 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloplanus Haloplanus aerogenes
26753518 26753518 PRJNA1136505_P_NODE_49481_length_447_cov_1.240642_g42622_i0 PRJNA1136505 49481 447 1.240642 5.54566974 Methanosarcinales archaeon 2250255 Archaea Archaea 169 1.3699999999999998e-48   NR RYE82365.1 2250255 g42622 i0 52.7 0.993288590604027 148 70 99.3 0 2 445 98 245 RYE82365.1 MAG: fatty acid desaturase, partial [Methanosarcinales archaeon] diamond 444 169 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales     Methanosarcinales archaeon
28997036 28997036 PRJNA1136505_P_NODE_98768_length_290_cov_1.308756_g91908_i0 PRJNA1136505 98768 290 1.308756 3.7953924 Haloglomus salinum 2962673 Archaea Archaea 44.7 0.0129   NR WP_254832223.1 2962673 g91908 i0 41.7 0.496551724137931 48 28 49.7 0 111 254 233 280 WP_254832223.1 glycosyltransferase family 2 protein [Haloglomus salinum] diamond 144 44.7 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Haloglomus Haloglomus salinum
29817476 29817476 PRJNA1136505_P_NODE_122011_length_260_cov_1.647059_g115151_i0 PRJNA1136505 122011 260 1.647059 4.2823534 Natronobacterium texcoconense 1095778 Archaea Archaea 42 0.0361   NR SDR00529.1 1095778 g115151 i0 32.1 0.934615384615385 81 52 93.5 2 258 16 8 85 SDR00529.1 Cupin domain-containing protein [Natronobacterium texcoconense] diamond 243 42 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronobacterium Natronobacterium texcoconense

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;