RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1136505", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1136505 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28270305 28270305 PRJNA1136505_P_NODE_144346_length_245_cov_1.122093_g137486_i0 PRJNA1136505 144346 245 1.122093 2.74912785 Lentisphaeria bacterium 2053569 Bacteria Bacteria 42.7 0.0396   NR MBS1369134.1 2053569 g137486 i0 39.4 0.808163265306122 66 39 80.8 1 202 5 1105 1169 MBS1369134.1 DUF4347 domain-containing protein [Lentisphaeria bacterium] diamond 198 42.7 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
32188525 32188525 PRJNA1136505_P_NODE_82438_length_321_cov_1.629032_g75578_i0 PRJNA1136505 82438 321 1.629032 5.22919272 Lentisphaerota bacterium 1932692 Bacteria Bacteria 51.6 7.4e-5   NR MCE9615271.1 1932692 g75578 i0 35 0.934579439252336 100 51 84.1 4 2 271 175 270 MCE9615271.1 right-handed parallel beta-helix repeat-containing protein [Lentisphaerota bacterium] diamond 300 51.6 1 Bacteria PVC group Pseudomonadati Lentisphaerota         Lentisphaerota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;