RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1134759", tax_phylum = "Deinococcota" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 1 ✖

tax_phylum 1

  • Deinococcota · 1 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1134759 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5387434 5387434 PRJNA1134759_P_NODE_55445_length_243_cov_1.411765_g55269_i0 PRJNA1134759 55445 243 1.411765 3.43058895 Deinococcus peraridilitoris 432329 Bacteria Bacteria 113 9.91e-21   NTclustered gi|429128598|gb|CP003382.1| 937777 g55269 i0 80.667 16.0658436213992 150 25 61 4 96 243 3550103 3550250 Deinococcus peraridilitoris DSM 19664, complete genome blastn 3904 113 1 Bacteria   Thermotogati Deinococcota Deinococci Deinococcales Deinococcaceae Deinococcus Deinococcus peraridilitoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;