contig_metadata
16 rows where bioproject = "PRJNA1134759" and tax_phylum = "Bacillota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2834810 | 2834810 | PRJNA1134759_P_NODE_36163_length_284_cov_1.872038_g35987_i0 | PRJNA1134759 | 36163 | 284 | 1.872038 | 5.31658792 | Caloramator sp. mosi_1 | 3023090 | Bacteria | Bacteria | 231 | 3.14e-56 | NTclustered | gi|2444358925|gb|CP117677.1| | 3023090 | g35987 | i0 | 81.72 | 3.42605633802817 | 279 | 49 | 98 | 2 | 7 | 284 | 878331 | 878054 | Caloramator sp. mosi_1 chromosome, complete genome | blastn | 973 | 231 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Caloramator | Caloramator sp. mosi_1 | ||
| 6134733 | 6134733 | PRJNA1134759_P_NODE_56525_length_242_cov_0.923077_g56349_i0 | PRJNA1134759 | 56525 | 242 | 0.923077 | 2.23384634 | Streptococcus | 1301 | Bacteria | Bacteria | 420 | 5.19e-113 | NTclustered | gi|1239731491|gb|CP017064.1| | 1308 | g56349 | i0 | 97.934 | 100 | 242 | 5 | 100 | 0 | 1 | 242 | 1415074 | 1415315 | Streptococcus thermophilus strain ST3 chromosome, complete genome | blastn | 24200 | 420 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Streptococcaceae | Streptococcus | Streptococcus thermophilus | ||
| 14313123 | 14313123 | PRJNA1134759_P_NODE_51552_length_249_cov_0.886364_g51376_i0 | PRJNA1134759 | 51552 | 249 | 0.886364 | 2.20704636 | Staphylococcus epidermidis | 1282 | Bacteria | Bacteria | 460 | 3.16e-125 | NTclustered | gi|1176884116|gb|CP020463.1| | 1282 | g51376 | i0 | 100 | 100 | 249 | 0 | 100 | 0 | 1 | 249 | 556630 | 556382 | Staphylococcus epidermidis strain 1457 chromosome, complete genome | blastn | 24900 | 460 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Staphylococcaceae | Staphylococcus | Staphylococcus epidermidis | ||
| 19410101 | 19410101 | PRJNA1134759_P_NODE_51536_length_249_cov_0.886364_g51360_i0 | PRJNA1134759 | 51536 | 249 | 0.886364 | 2.20704636 | Cytobacillus firmus | 1399 | Bacteria | Bacteria | 231 | 2.7e-56 | NTclustered | gi|2511383467|gb|CP126108.1| | 1399 | g51360 | i0 | 83.468 | 76.9357429718875 | 248 | 41 | 99 | 0 | 1 | 248 | 110336 | 110583 | Cytobacillus firmus strain SQ11 chromosome, complete genome | blastn | 19157 | 231 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Cytobacillus | Cytobacillus firmus | ||
| 20685598 | 20685598 | PRJNA1134759_P_NODE_54977_length_244_cov_0.912281_g54801_i0 | PRJNA1134759 | 54977 | 244 | 0.912281 | 2.22596564 | Lactobacillus crispatus | 47770 | Bacteria | Bacteria | 451 | 1.86e-122 | NTclustered | gi|2096299657|gb|CP083392.1| | 47770 | g54801 | i0 | 100 | 30 | 244 | 0 | 100 | 0 | 1 | 244 | 1268306 | 1268063 | Lactobacillus crispatus strain Lc1226 chromosome, complete genome | blastn | 7320 | 451 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Lactobacillales | Lactobacillaceae | Lactobacillus | Lactobacillus crispatus | ||
| 25258195 | 25258195 | PRJNA1134759_P_NODE_27180_length_319_cov_1.585366_g27004_i0 | PRJNA1134759 | 27180 | 319 | 1.585366 | 5.05731754 | Clostridium | 1485 | Bacteria | Bacteria | 239 | 2.14e-58 | NTclustered | gi|1943187032|gb|CP065677.1| | 1502 | g27004 | i0 | 80.495 | 66.3134796238244 | 323 | 53 | 99 | 8 | 2 | 319 | 694276 | 694593 | Clostridium perfringens strain FDAARGOS_904 chromosome, complete genome | blastn | 21154 | 239 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Eubacteriales | Clostridiaceae | Clostridium | Clostridium perfringens | ||
| 27386614 | 27386614 | PRJNA1134759_P_NODE_48743_length_253_cov_0.866667_g48567_i0 | PRJNA1134759 | 48743 | 253 | 0.866667 | 2.19266751 | Sediminibacillus albus | 407036 | Bacteria | Bacteria | 94.7 | 3.61e-22 | NR | WP_093216320.1 | 407036 | g48567 | i0 | 52.6 | 0.924901185770751 | 78 | 36 | 92.5 | 1 | 252 | 19 | 68 | 144 | WP_093216320.1 RNA 2',3'-cyclic phosphodiesterase [Sediminibacillus albus] | diamond | 234 | 94.7 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Sediminibacillus | Sediminibacillus albus | ||
| 27596667 | 27596667 | PRJNA1134759_P_NODE_55044_length_244_cov_0.912281_g54868_i0 | PRJNA1134759 | 55044 | 244 | 0.912281 | 2.22596564 | Bacillaceae | 186817 | Bacteria | Bacteria | 97.8 | 7.93e-22 | NR | WP_276703522.1 | 301148 | g54868 | i0 | 54.3 | 3.98360655737705 | 81 | 37 | 99.6 | 0 | 2 | 244 | 139 | 219 | WP_276703522.1 M16 family metallopeptidase [Caldibacillus debilis] | diamond | 972 | 97.8 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Caldibacillus | Caldibacillus debilis | ||
| 27891470 | 27891470 | PRJNA1134759_P_NODE_55025_length_244_cov_0.912281_g54849_i0 | PRJNA1134759 | 55025 | 244 | 0.912281 | 2.22596564 | Salibacterium salarium | 284579 | Bacteria | Bacteria | 133 | 8.549999999999999e-38 | NR | WP_125556713.1 | 284579 | g54849 | i0 | 72.5 | 0.983606557377049 | 80 | 22 | 98.4 | 0 | 242 | 3 | 31 | 110 | WP_125556713.1 DUF6884 domain-containing protein [Salibacterium salarium] | diamond | 240 | 133 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Salibacterium | Salibacterium salarium | ||
| 29490856 | 29490856 | PRJNA1134759_P_NODE_52190_length_248_cov_0.891429_g52014_i0 | PRJNA1134759 | 52190 | 248 | 0.891429 | 2.21074392 | Bacteria | 2 | Bacteria | Bacteria | 43.5 | 0.0208 | NR | WP_031585911.1 | 416586 | g52014 | i0 | 43.8 | 2.12903225806452 | 48 | 26 | 58.1 | 1 | 64 | 207 | 433 | 479 | WP_031585911.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Selenomonas bovis] | diamond | 528 | 43.5 | 1 | Bacteria | Bacillati | Bacillota | Negativicutes | Selenomonadales | Selenomonadaceae | Selenomonas | Selenomonas bovis | ||
| 29564993 | 29564993 | PRJNA1134759_P_NODE_17590_length_383_cov_0.738710_g17414_i0 | PRJNA1134759 | 17590 | 383 | 0.73871 | 2.8292593 | Halanaerobiales bacterium | 2094029 | Bacteria | Bacteria | 173 | 2.2299999999999996e-47 | NR | MBS3812162.1 | 2094029 | g17414 | i0 | 77.2 | 0.994778067885117 | 127 | 29 | 99.5 | 0 | 3 | 383 | 61 | 187 | MBS3812162.1 hypothetical protein [Halanaerobiales bacterium] | diamond | 381 | 173 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Halanaerobiales | Halanaerobiales bacterium | ||||
| 30038740 | 30038740 | PRJNA1134759_P_NODE_11031_length_471_cov_2.130653_g10855_i0 | PRJNA1134759 | 11031 | 471 | 2.130653 | 10.03537563 | Planococcus shixiaomingii | 3058393 | Bacteria | Bacteria | 64.7 | 7.75e-9 | NR | WP_301723276.1 | 3058393 | g10855 | i0 | 31.8 | 0.961783439490446 | 151 | 99 | 93.6 | 2 | 31 | 471 | 169 | 319 | WP_301723276.1 hypothetical protein [Planococcus shixiaomingii] | diamond | 453 | 64.7 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Caryophanaceae | Planococcus | Planococcus shixiaomingii | ||
| 30323680 | 30323680 | PRJNA1134759_P_NODE_55052_length_244_cov_0.912281_g54876_i0 | PRJNA1134759 | 55052 | 244 | 0.912281 | 2.22596564 | Bacillus songklensis | 1069116 | Bacteria | Bacteria | 91.3 | 4.13e-20 | NR | WP_377915312.1 | 1069116 | g54876 | i0 | 71.7 | 0.737704918032787 | 60 | 17 | 73.8 | 0 | 1 | 180 | 78 | 137 | WP_377915312.1 transporter substrate-binding domain-containing protein [Bacillus songklensis] | diamond | 180 | 91.3 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillaceae | Bacillus | Bacillus songklensis | ||
| 30733816 | 30733816 | PRJNA1134759_P_NODE_9274_length_510_cov_2.372998_g9098_i0 | PRJNA1134759 | 9274 | 510 | 2.372998 | 12.1022898 | Planococcus shixiaomingii | 3058393 | Bacteria | Bacteria | 52 | 2.66e-4 | NR | WP_301723276.1 | 3058393 | g9098 | i0 | 28.2 | 0.917647058823529 | 156 | 96 | 88.2 | 4 | 478 | 29 | 9 | 154 | WP_301723276.1 hypothetical protein [Planococcus shixiaomingii] | diamond | 468 | 52 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Caryophanaceae | Planococcus | Planococcus shixiaomingii | ||
| 31112811 | 31112811 | PRJNA1134759_P_NODE_50835_length_250_cov_0.881356_g50659_i0 | PRJNA1134759 | 50835 | 250 | 0.881356 | 2.20339 | Halanaerobiales bacterium | 2094029 | Bacteria | Bacteria | 53.1 | 8.59e-6 | NR | MBS3812162.1 | 2094029 | g50659 | i0 | 64.1 | 0.468 | 39 | 11 | 43.2 | 1 | 138 | 245 | 690 | 728 | MBS3812162.1 hypothetical protein [Halanaerobiales bacterium] | diamond | 117 | 53.1 | 1 | Bacteria | Bacillati | Bacillota | Clostridia | Halanaerobiales | Halanaerobiales bacterium | ||||
| 32505027 | 32505027 | PRJNA1134759_P_NODE_53499_length_246_cov_0.901734_g53323_i0 | PRJNA1134759 | 53499 | 246 | 0.901734 | 2.21826564 | Bacillales bacterium | 1904864 | Bacteria | Bacteria | 64.3 | 3.78e-11 | NR | HET7578327.1 | 1904864 | g53323 | i0 | 93.8 | 0.390243902439024 | 32 | 2 | 39 | 0 | 97 | 2 | 1 | 32 | HET7578327.1 DUF3870 domain-containing protein [Bacillales bacterium] | diamond | 96 | 64.3 | 1 | Bacteria | Bacillati | Bacillota | Bacilli | Bacillales | Bacillales bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;