RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1132896" and tax_phylum = "Minisyncoccota"

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tax_superkingdom 1

tax_phylum 1

  • Minisyncoccota · 6 ✖

tax_clade 1

bioproject 1

  • PRJNA1132896 · 6 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27607570 27607570 PRJNA1132896_P_NODE_3504_length_302_cov_2.043668_g3413_i0 PRJNA1132896 3504 302 2.043668 6.17187736 Minisyncoccota bacterium 2053589 Bacteria Bacteria 65.9 1.16e-11   NR HMA78656.1 2053589 g3413 i0 50.9 0.566225165562914 57 28 56.6 0 172 2 1 57 HMA78656.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 171 65.9 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
29722603 29722603 PRJNA1132896_P_NODE_3910_length_290_cov_1.359447_g3819_i0 PRJNA1132896 3910 290 1.359447 3.9423963 Candidatus Spechtbacterales bacterium 3085100 Bacteria Bacteria 60.8 8.27e-10   NR MEX0877433.1 3085100 g3819 i0 58.3 0.496551724137931 48 19 49.7 1 289 146 34 80 MEX0877433.1 hypothetical protein [Candidatus Spechtbacterales bacterium] diamond 144 60.8 1 Bacteria Bacteria candidate phyla   Minisyncoccota   Candidatus Spechtbacterales     Candidatus Spechtbacterales bacterium
31745359 31745359 PRJNA1132896_P_NODE_10217_length_241_cov_0.916667_g10126_i0 PRJNA1132896 10217 241 0.916667 2.20916747 Minisyncoccota bacterium 2053589 Bacteria Bacteria 104 3.55e-25   NR HMA77785.1 2053589 g10126 i0 67.1 0.946058091286307 76 25 94.6 0 3 230 162 237 HMA77785.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 228 104 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32061798 32061798 PRJNA1132896_P_NODE_10098_length_241_cov_1.113095_g10007_i0 PRJNA1132896 10098 241 1.113095 2.68255895 Minisyncoccota bacterium 2053589 Bacteria Bacteria 43.1 0.0266   NR MEZ0208986.1 2053589 g10007 i0 35.6 0.734439834024896 59 38 73.4 0 197 21 1034 1092 MEZ0208986.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 177 43.1 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32125321 32125321 PRJNA1132896_P_NODE_3158_length_316_cov_1.024691_g3067_i0 PRJNA1132896 3158 316 1.024691 3.23802356 Minisyncoccota bacterium 2053589 Bacteria Bacteria 178 8.179999999999997e-55   NR HMA78655.1 2053589 g3067 i0 86.5 0.911392405063291 96 13 91.1 0 314 27 80 175 HMA78655.1 hypothetical protein [Candidatus Paceibacterota bacterium] diamond 288 178 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium
32378334 32378334 PRJNA1132896_P_NODE_6419_length_255_cov_1.318681_g6328_i0 PRJNA1132896 6419 255 1.318681 3.36263655 Minisyncoccota bacterium 2053589 Bacteria Bacteria 137 7.16e-39   NR HWU24746.1 2053589 g6328 i0 98.6 0.835294117647059 71 1 83.5 0 41 253 1 71 HWU24746.1 sigma-70 family RNA polymerase sigma factor [Candidatus Paceibacterota bacterium] diamond 213 137 1 Bacteria Bacteria candidate phyla   Minisyncoccota         Minisyncoccota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;