RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1132896", tax_kingdom = "Methanobacteriati" and tax_phylum = "Thermoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Thermoplasmatota · 2 ✖

tax_kingdom 1

  • Methanobacteriati · 2 ✖

bioproject 1

  • PRJNA1132896 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28017998 28017998 PRJNA1132896_P_NODE_10625_length_228_cov_3.477419_g10534_i0 PRJNA1132896 10625 228 3.477419 7.92851532 Thermoplasmatota archaeon 2806419 Archaea Archaea 45.8 0.00173   NR MEF8834548.1 2806419 g10534 i0 64 0.657894736842105 25 9 32.9 0 75 1 1 25 MEF8834548.1 NADH-quinone oxidoreductase subunit NuoE [Thermoplasmatota archaeon] diamond 150 45.8 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
30007326 30007326 PRJNA1132896_P_NODE_3611_length_299_cov_0.880531_g3520_i0 PRJNA1132896 3611 299 0.880531 2.63278769 Thermoplasmata archaeon 1906666 Archaea Archaea 73.2 7.26e-14   NR RLF45648.1 1906666 g3520 i0 40.4 0.892976588628763 89 52 89.3 1 268 2 9 96 RLF45648.1 MAG: hypothetical protein DRN17_02110 [Thermoplasmata archaeon] diamond 267 73.2 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;