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contig_metadata

4 rows where bioproject = "PRJNA1132896" and tax_clade = "delta/epsilon subdivisions"

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analysis 2

tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA1132896 · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8684841 8684841 PRJNA1132896_P_NODE_1227_length_470_cov_1.884131_g1136_i0 PRJNA1132896 1227 470 1.884131 8.8554157 delta/epsilon subdivisions 68525 Bacteria Bacteria 869 0   NTclustered gi|1139283245|emb|LT697265.1| 34034 g1136 i0 100 97.5914893617021 470 0 100 0 1 470 484 15 uncultured delta proteobacterium partial 16S rRNA gene, isolate 10T_22683 blastn 45868 869 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
9959894 9959894 PRJNA1132896_P_NODE_6948_length_251_cov_0.865169_g6857_i0 PRJNA1132896 6948 251 0.865169 2.17157419 Pseudomonadota 1224 Bacteria Bacteria 63.9 1.05e-5   NTclustered gi|2874253888|emb|OY970063.1| 34034 g6857 i0 97.297 113.501992031873 37 1 15 0 173 209 2338389 2338353 MAG: uncultured delta proteobacterium isolate MFD10007.bin.1.119 genome assembly, chromosome: 1 blastn 28489 63.9 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
30481123 30481123 PRJNA1132896_P_NODE_4853_length_277_cov_1.401961_g4762_i0 PRJNA1132896 4853 277 1.401961 3.88343197 Deltaproteobacteria bacterium RBG_13_47_9 1797826 Bacteria Bacteria 85.5 2.97e-17   NR OGP66167.1 1797826 g4762 i0 65.6 0.693140794223827 64 20 67.1 1 276 91 67 130 OGP66167.1 MAG: hypothetical protein A2169_14035, partial [Deltaproteobacteria bacterium RBG_13_47_9] diamond 192 85.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RBG_13_47_9
30481128 30481128 PRJNA1132896_P_NODE_8853_length_245_cov_0.895349_g8762_i0 PRJNA1132896 8853 245 0.895349 2.19360505 Persicimonas caeni 2292766 Bacteria Bacteria 78.6 8.13e-15   NR WP_141197810.1 2292766 g8762 i0 46.9 0.991836734693878 81 43 99.2 0 2 244 322 402 WP_141197810.1 hypothetical protein [Persicimonas caeni] diamond 243 78.6 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Bradymonadaceae Persicimonas Persicimonas caeni

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;