RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1132896", tax_clade = "Sar" and tax_phylum = "Endomyxa"

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tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1132896 · 4 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27027735 27027735 PRJNA1132896_P_NODE_8202_length_247_cov_0.885057_g8111_i0 PRJNA1132896 8202 247 0.885057 2.18609079 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 53.9 4.4e-6   NR CEP01062.1 37360 g8111 i0 37.7 2.8663967611336 77 47 93.5 1 12 242 190 265 CEP01062.1 hypothetical protein PBRA_008374 [Plasmodiophora brassicae] diamond 708 54.3 0.992633517495396 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28164908 28164908 PRJNA1132896_P_NODE_3905_length_290_cov_1.405530_g3814_i0 PRJNA1132896 3905 290 1.40553 4.076037 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 67.4 1.46e-10   NR SPQ96640.1 37360 g3814 i0 40.8 1.84137931034483 103 40 87.9 4 3 257 1386 1485 SPQ96640.1 unnamed protein product [Plasmodiophora brassicae] diamond 534 67.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29711611 29711611 PRJNA1132896_P_NODE_7050_length_250_cov_1.378531_g6959_i0 PRJNA1132896 7050 250 1.378531 3.4463275 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 87 1.09e-17   NR CEO95116.1 37360 g6959 i0 59 2.76 78 30 91.2 2 16 243 132 209 CEO95116.1 hypothetical protein PBRA_003882 [Plasmodiophora brassicae] diamond 690 87 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30323657 30323657 PRJNA1132896_P_NODE_10432_length_238_cov_2.800000_g10341_i0 PRJNA1132896 10432 238 2.8 6.664 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 52.8 1.03e-5   NR CEO95180.1 37360 g10341 i0 33.3 1.81512605042017 75 49 94.5 1 225 1 110 183 CEO95180.1 hypothetical protein PBRA_003946 [Plasmodiophora brassicae] diamond 432 52.8 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;