RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1132896" and tax_clade = "Methanomada group"

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analysis 2

tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Methanomada group · 3 ✖

bioproject 1

  • PRJNA1132896 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16334173 16334173 PRJNA1132896_P_NODE_2253_length_363_cov_1.627586_g2162_i0 PRJNA1132896 2253 363 1.627586 5.90813718 Methanobacterium 2160 Archaea Archaea 621 2.09e-173   NTclustered gi|584298061|gb|KF882000.1| 483896 g2162 i0 97.521 139.628099173554 363 9 100 0 1 363 248 610 Methanobacterium kanagiense strain 169 23S ribosomal RNA gene, partial sequence blastn 50685 621 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium kanagiense
19409522 19409522 PRJNA1132896_P_NODE_5256_length_271_cov_1.469697_g5165_i0 PRJNA1132896 5256 271 1.469697 3.98287887 Methanobacterium petrolearium 710190 Archaea Archaea 289 1.74e-73   NTclustered gi|2465759960|dbj|AP027739.1| 710190 g5165 i0 90.868 0.808118081180812 219 14 79 4 57 271 2257833 2257617 Methanobacterium petrolearium NBRC 105198 DNA, complete genome blastn 219 289 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium petrolearium
30070245 30070245 PRJNA1132896_P_NODE_3292_length_310_cov_3.130802_g3201_i0 PRJNA1132896 3292 310 3.130802 9.7054862 Methanobacterium formicicum 2162 Archaea Archaea 86.7 2.84e-17   NR WP_048084636.1 2162 g3201 i0 84.8 0.445161290322581 46 7 44.5 0 305 168 1 46 WP_048084636.1 Gfo/Idh/MocA family oxidoreductase [Methanobacterium formicicum] diamond 138 86.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium formicicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;