RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1132896", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1132896 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6661484 6661484 PRJNA1132896_P_NODE_4286_length_285_cov_1.198113_g4195_i0 PRJNA1132896 4286 285 1.198113 3.41462205 Longimicrobium sp. 2029185 Bacteria Bacteria 149 1.01e-39   NR WP_329683760.1 2029185 g4195 i0 94.3 0.926315789473684 88 5 92.6 0 264 1 39 126 WP_329683760.1 flagellar biosynthesis protein FlhA [Longimicrobium sp.] diamond 264 149 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
13037306 13037306 PRJNA1132896_P_NODE_1031_length_510_cov_2.549199_g940_i0 PRJNA1132896 1031 510 2.549199 13.0009149 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 671 0   NTclustered gi|2874253978|emb|OY970303.1| 412054 g940 i0 91.107 136.235294117647 506 29 96 4 10 499 1904048 1903543 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 69480 671 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
30070248 30070248 PRJNA1132896_P_NODE_5432_length_268_cov_1.707692_g5341_i0 PRJNA1132896 5432 268 1.707692 4.57661456 Longimicrobiales bacterium 2910168 Bacteria Bacteria 120 5.31e-33   NR MFO8174824.1 2910168 g5341 i0 63.9 0.92910447761194 83 30 92.9 0 249 1 6 88 MFO8174824.1 hypothetical protein [Longimicrobiales bacterium] diamond 249 120 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;