RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1129273" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1129273 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
13036950 13036950 PRJNA1129273_P_NODE_11271_length_216_cov_4.328671_g10991_i0 PRJNA1129273 11271 216 4.328671 9.34992936 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 291 3.709999999999999e-74   NTclustered gi|2874253755|emb|OY969695.1| 412054 g10991 i0 91.204 110.041666666667 216 16 99 3 2 216 343138 342925 MAG: uncultured Gemmatimonadales bacterium isolate MFD04967.bin.1.34 genome assembly, chromosome: 1 blastn 23769 291 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
16334077 16334077 PRJNA1129273_P_NODE_10813_length_237_cov_2.945122_g10533_i0 PRJNA1129273 10813 237 2.945122 6.97993914 Gemmatimonas 173479 Bacteria Bacteria 422 1.41e-113   NTclustered gi|470475286|ref|NR_076270.1| 173480 g10533 i0 98.734 140.476793248945 237 3 100 0 1 237 1191 955 Gemmatimonas aurantiaca strain T-27 23S ribosomal RNA gene, complete sequence blastn 33293 422 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas aurantiaca

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;