RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1129273", tax_phylum = "Armatimonadota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

  • Armatimonadota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1129273 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6134487 6134487 PRJNA1129273_P_NODE_10745_length_239_cov_3.536145_g10465_i0 PRJNA1129273 10745 239 3.536145 8.45138655 Fimbriimonas 1005038 Bacteria Bacteria 329 8.86e-86   NTclustered gi|663071213|gb|CP007139.1| 661478 g10465 i0 91.915 332.995815899582 235 19 98 0 2 236 27522 27288 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 79586 329 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
7409581 7409581 PRJNA1129273_P_NODE_6266_length_284_cov_2.753555_g5986_i0 PRJNA1129273 6266 284 2.753555 7.8200962 Fimbriimonas 1005038 Bacteria Bacteria 424 4.82e-114   NTclustered gi|663071213|gb|CP007139.1| 661478 g5986 i0 93.662 759.214788732394 284 16 99 2 1 283 27111 26829 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 215617 424 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
27797042 27797042 PRJNA1129273_P_NODE_10464_length_242_cov_1.822485_g10184_i0 PRJNA1129273 10464 242 1.822485 4.4104137 Chthonomonadaceae bacterium 2739509 Bacteria Bacteria 117 1.99e-28   NR MCW3094888.1 2739509 g10184 i0 68.8 0.954545454545455 77 24 95.5 0 236 6 646 722 MCW3094888.1 TonB family protein [Chthonomonadaceae bacterium] diamond 231 117 1 Bacteria   Bacillati Armatimonadota Chthonomonadia Chthonomonadales Chthonomonadaceae   Chthonomonadaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;