RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1129273", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 4 ✖

tax_kingdom 1

  • Pseudomonadati · 4 ✖

bioproject 1

  • PRJNA1129273 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4110243 4110243 PRJNA1129273_P_NODE_10504_length_242_cov_1.366864_g10224_i0 PRJNA1129273 10504 242 1.366864 3.30781088 Desulfobacteraceae bacterium 2049433 Bacteria Bacteria 91.7 2.21e-19   NR HAO22905.1 2049433 g10224 i0 53.2 0.954545454545455 77 35 95.5 1 9 239 242 317 HAO22905.1 hypothetical protein [Desulfobacteraceae bacterium] diamond 231 91.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfobacteraceae   Desulfobacteraceae bacterium
29344084 29344084 PRJNA1129273_P_NODE_4889_length_323_cov_0.912000_g4609_i0 PRJNA1129273 4889 323 0.912 2.94576 Syntrophorhabdaceae bacterium 2660714 Bacteria Bacteria 64.7 1.64e-9   NR MBP7529786.1 2660714 g4609 i0 37.3 1.84829721362229 102 58 94.7 3 1 306 164 259 MBP7529786.1 AAA family ATPase [Syntrophorhabdaceae bacterium] diamond 597 64.7 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophorhabdia Syntrophorhabdales Syntrophorhabdaceae   Syntrophorhabdaceae bacterium
32283604 32283604 PRJNA1129273_P_NODE_8679_length_251_cov_0.876404_g8399_i0 PRJNA1129273 8679 251 0.876404 2.19977404 Syntrophales bacterium 2928017 Bacteria Bacteria 87.4 7.05e-18   NR MDD5640051.1 2928017 g8399 i0 50.6 4.82868525896414 81 40 96.8 0 248 6 409 489 MDD5640051.1 FAD-dependent oxidoreductase [Syntrophales bacterium] diamond 1212 87.4 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Syntrophia Syntrophales     Syntrophales bacterium
32367499 32367499 PRJNA1129273_P_NODE_10379_length_243_cov_0.905882_g10099_i0 PRJNA1129273 10379 243 0.905882 2.20129326 Pseudomonadati 3379134 Bacteria Bacteria 123 4.639999999999999e-32   NR WP_011940279.1 351604 g10099 i0 69.6 9.81481481481481 79 24 97.5 0 239 3 4 82 WP_011940279.1 radical SAM protein [Geotalea uraniireducens] diamond 2385 124 0.991935483870968 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfuromonadia Geobacterales Geobacteraceae Geotalea Geotalea uraniireducens

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;