RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1129273", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA1129273 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6134505 6134505 PRJNA1129273_P_NODE_6485_length_280_cov_2.908213_g6205_i0 PRJNA1129273 6485 280 2.908213 8.1429964 Bacteriovorax sp. BSW11_IV 1353529 Bacteria Bacteria 72.4 1.78e-12   NR WP_021270609.1 1353529 g6205 i0 66.7 2.16428571428571 51 17 54.6 0 128 280 2 52 WP_021270609.1 molecular chaperone DnaJ [Bacteriovorax sp. BSW11_IV] diamond 606 72.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. BSW11_IV
16860419 16860419 PRJNA1129273_P_NODE_1494_length_676_cov_1.985075_g1232_i0 PRJNA1129273 1494 676 1.985075 13.419107 Peredibacter sp. HCB2-198 3383025 Bacteria Bacteria 1077 0   NTclustered gi|2867657404|gb|CP174607.1| 3383025 g1232 i0 95.414 120.616863905325 676 31 100 0 1 676 1292968 1292293 Peredibacter sp. HCB2-198 chromosome, complete genome blastn 81537 1077 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter sp. HCB2-198
20684654 20684654 PRJNA1129273_P_NODE_10617_length_242_cov_0.911243_g10337_i0 PRJNA1129273 10617 242 0.911243 2.20520806 Bacteriovorax sp. HI3 2984118 Bacteria Bacteria 252 2e-62   NTclustered gi|2321225508|dbj|AP026946.1| 2984118 g10337 i0 86.017 2.96694214876033 236 31 97 1 6 239 854093 853858 Bacteriovorax sp. HI3 DNA, complete genome blastn 718 252 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp. HI3

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;