RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1129273", tax_kingdom = "Metazoa" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1129273 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30923638 30923638 PRJNA1129273_P_NODE_1574_length_653_cov_4.598276_g1310_i0 PRJNA1129273 1574 653 4.598276 30.02674228 Geodia barretti 519541 Porifera other_Eukaryota 108 1.73e-25   NR CAI8030757.1 519541 g1310 i0 47.8 0.633996937212864 138 57 60.2 6 259 651 18 147 CAI8030757.1 hypothetical protein GBAR_LOCUS17449 [Geodia barretti] diamond 414 108 1 Eukaryota Opisthokonta Metazoa Porifera Demospongiae Tetractinellida Geodiidae Geodia Geodia barretti
31450010 31450010 PRJNA1129273_P_NODE_8876_length_250_cov_0.875706_g8596_i0 PRJNA1129273 8876 250 0.875706 2.189265 Opisthokonta 33154 Porifera other_Eukaryota 100 1.4000000000000002e-22   NR KAI6647113.1 111878 g8596 i0 51.9 7.752 81 39 97.2 0 245 3 36 116 KAI6647113.1 Splicing factor 3B subunit 3 [Oopsacas minuta] diamond 1938 101 0.99009900990099 Eukaryota Opisthokonta Metazoa Porifera Hexactinellida Lyssacinosida Leucopsacidae Oopsacas Oopsacas minuta
32757002 32757002 PRJNA1129273_P_NODE_3400_length_398_cov_1.649231_g3120_i0 PRJNA1129273 3400 398 1.649231 6.56393938 Oscarella lobularis 121494 Porifera other_Eukaryota 115 8.53e-30   NR XP_065831071.1 121494 g3120 i0 68.5 16.1005025125628 92 28 68.6 1 278 6 19 110 XP_065831071.1 large ribosomal subunit protein uL23-like [Oscarella lobularis] diamond 6408 116 0.991379310344828 Eukaryota Opisthokonta Metazoa Porifera Homoscleromorpha Homosclerophorida Oscarellidae Oscarella Oscarella lobularis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;