RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1129273" and tax_kingdom = "Fusobacteriati"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 4 ✖

bioproject 1

  • PRJNA1129273 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1031670 1031670 PRJNA1129273_P_NODE_8461_length_252_cov_1.899441_g8181_i0 PRJNA1129273 8461 252 1.899441 4.78659132 Fusobacterium 848 Bacteria Bacteria 457 4.14e-124   NTclustered gi|1208657894|gb|CP021934.1| 76857 g8181 i0 99.6 487.107142857143 250 1 99 0 1 250 1603784 1603535 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1260 (=ChDC F218) genome blastn 122751 457 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium polymorphum
7409586 7409586 PRJNA1129273_P_NODE_7446_length_266_cov_1.590674_g7166_i0 PRJNA1129273 7446 266 1.590674 4.23119284 Fusobacterium 848 Bacteria Bacteria 488 1.5599999999999996e-133   NTclustered gi|2704977725|gb|CP077125.1| 851 g7166 i0 100 424.84962406015 264 0 99 0 2 265 511737 511474 Fusobacterium nucleatum strain KCOM3714 chromosome, complete genome blastn 113010 488 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium nucleatum
15059376 15059376 PRJNA1129273_P_NODE_7012_length_272_cov_1.723618_g6732_i0 PRJNA1129273 7012 272 1.723618 4.68824096 Leptotrichia 32067 Bacteria Bacteria 496 9.59e-136   NTclustered gi|1708566027|dbj|AP019823.1| 157688 g6732 i0 99.631 172.797794117647 271 1 99 0 1 271 577369 577639 Leptotrichia hofstadii JCM16775 DNA, complete genome blastn 47001 496 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Leptotrichiaceae Leptotrichia Leptotrichia hofstadii
16334086 16334086 PRJNA1129273_P_NODE_4893_length_322_cov_4.381526_g4613_i0 PRJNA1129273 4893 322 4.381526 14.10851372 Cetobacterium 180162 Bacteria Bacteria 593 3.9999999999999996e-165   NTclustered gi|2865368125|gb|CP122294.1| 188913 g4613 i0 100 144.627329192547 321 0 99 0 2 322 277573 277253 Cetobacterium somerae strain MSU41 plasmid p41_t2, complete sequence blastn 46570 593 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Cetobacterium Cetobacterium somerae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;