contig_metadata
15 rows where bioproject = "PRJNA1129273", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1557875 | 1557875 | PRJNA1129273_P_NODE_7922_length_259_cov_3.715054_g7642_i0 | PRJNA1129273 | 7922 | 259 | 3.715054 | 9.62198986 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 326 | 1.26e-84 | NTclustered | gi|2874254020|emb|OY970345.1| | 412056 | g7642 | i0 | 91.057 | 82.5057915057915 | 246 | 15 | 93 | 7 | 19 | 259 | 3893546 | 3893303 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 | blastn | 21369 | 326 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 4110253 | 4110253 | PRJNA1129273_P_NODE_2224_length_529_cov_2.907895_g1948_i0 | PRJNA1129273 | 2224 | 529 | 2.907895 | 15.38276455 | Verrucomicrobiota bacterium | 2026799 | Bacteria | Bacteria | 143 | 2.99e-29 | NTclustered | gi|2916415364|gb|CP170459.1| | 2026799 | g1948 | i0 | 83.125 | 28.9243856332703 | 160 | 23 | 30 | 4 | 360 | 517 | 2577507 | 2577350 | MAG: Verrucomicrobiota bacterium isolate tig00002468 chromosome, complete genome | blastn | 15301 | 143 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiota bacterium | |||||
| 6661106 | 6661106 | PRJNA1129273_P_NODE_2186_length_534_cov_3.689805_g1910_i0 | PRJNA1129273 | 2186 | 534 | 3.689805 | 19.7035587 | Lacunisphaera limnophila | 1838286 | Bacteria | Bacteria | 741 | 0 | NTclustered | gi|1070531674|gb|CP016094.1| | 1838286 | g1910 | i0 | 91.745 | 136.947565543071 | 533 | 44 | 99 | 0 | 1 | 533 | 2556925 | 2556393 | Lacunisphaera limnophila strain IG16b, complete genome | blastn | 73130 | 741 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Lacunisphaera | Lacunisphaera limnophila | |
| 6661145 | 6661145 | PRJNA1129273_P_NODE_7506_length_265_cov_1.713542_g7226_i0 | PRJNA1129273 | 7506 | 265 | 1.713542 | 4.5408863 | Pedosphaera parvula | 1032527 | Bacteria | Bacteria | 285 | 2.19e-72 | NTclustered | gi|183579829|emb|AM905426.1| | 320771 | g7226 | i0 | 86.466 | 45.777358490566 | 266 | 29 | 98 | 7 | 4 | 264 | 1631 | 1368 | Bacterium Ellin514 23S rRNA gene, isolate Ellin514 | blastn | 12131 | 285 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Pedosphaerae | Pedosphaerales | Pedosphaeraceae | Pedosphaera | Pedosphaera parvula | |
| 7936258 | 7936258 | PRJNA1129273_P_NODE_11007_length_231_cov_2.468354_g10727_i0 | PRJNA1129273 | 11007 | 231 | 2.468354 | 5.70189774 | Lacunisphaera limnophila | 1838286 | Bacteria | Bacteria | 425 | 1.0599999999999999e-114 | NTclustered | gi|1070531674|gb|CP016094.1| | 1838286 | g10727 | i0 | 100 | 160.580086580087 | 230 | 0 | 99 | 0 | 2 | 231 | 2557847 | 2558076 | Lacunisphaera limnophila strain IG16b, complete genome | blastn | 37094 | 425 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Lacunisphaera | Lacunisphaera limnophila | |
| 9211237 | 9211237 | PRJNA1129273_P_NODE_11008_length_231_cov_2.449367_g10728_i0 | PRJNA1129273 | 11008 | 231 | 2.449367 | 5.65803777 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 388 | 1.39e-103 | NTclustered | gi|2874254020|emb|OY970345.1| | 412056 | g10728 | i0 | 97.778 | 173.65367965368 | 225 | 5 | 97 | 0 | 1 | 225 | 3894484 | 3894708 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 | blastn | 40114 | 388 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 11761856 | 11761856 | PRJNA1129273_P_NODE_3690_length_380_cov_2.097720_g3410_i0 | PRJNA1129273 | 3690 | 380 | 2.09772 | 7.971336 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 623 | 6.119999999999999e-174 | NTclustered | gi|2874254020|emb|OY970345.1| | 412056 | g3410 | i0 | 96.552 | 227.952631578947 | 377 | 12 | 99 | 1 | 5 | 380 | 3892529 | 3892905 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 | blastn | 86622 | 623 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 13036958 | 13036958 | PRJNA1129273_P_NODE_3451_length_395_cov_1.509317_g3171_i0 | PRJNA1129273 | 3451 | 395 | 1.509317 | 5.96180215 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 647 | 0 | NTclustered | gi|2874253768|emb|OY969715.1| | 412056 | g3171 | i0 | 96.203 | 136.921518987342 | 395 | 15 | 100 | 0 | 1 | 395 | 914882 | 915276 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD01916.bin.1.1 genome assembly, chromosome: 1 | blastn | 54084 | 647 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 15586160 | 15586160 | PRJNA1129273_P_NODE_10693_length_241_cov_2.071429_g10413_i0 | PRJNA1129273 | 10693 | 241 | 2.071429 | 4.99214389 | Luteolibacter sp. SL250 | 2995170 | Bacteria | Bacteria | 398 | 2.4199999999999995e-106 | NTclustered | gi|2381117106|gb|CP113054.1| | 2995170 | g10413 | i0 | 96.667 | 285.622406639004 | 240 | 6 | 99 | 2 | 2 | 240 | 869 | 631 | Luteolibacter sp. SL250 chromosome | blastn | 68835 | 398 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiales | Verrucomicrobiaceae | Luteolibacter | Luteolibacter sp. SL250 | |
| 15586185 | 15586185 | PRJNA1129273_P_NODE_4773_length_326_cov_2.494071_g4493_i0 | PRJNA1129273 | 4773 | 326 | 2.494071 | 8.13067146 | uncultured Verrucomicrobiae bacterium | 412056 | Bacteria | Bacteria | 553 | 6.889999999999998e-153 | NTclustered | gi|2874254020|emb|OY970345.1| | 412056 | g4493 | i0 | 97.239 | 415.01226993865 | 326 | 9 | 100 | 0 | 1 | 326 | 3893614 | 3893939 | MAG: uncultured Verrucomicrobiae bacterium isolate MFD04212.bin.2.122 genome assembly, chromosome: 1 | blastn | 135294 | 553 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | uncultured Verrucomicrobiae bacterium | ||||
| 16860421 | 16860421 | PRJNA1129273_P_NODE_1814_length_600_cov_2.370019_g1545_i0 | PRJNA1129273 | 1814 | 600 | 2.370019 | 14.220114 | Opitutus sp. GAS368 | 1882749 | Bacteria | Bacteria | 987 | 0 | NTclustered | gi|1085764882|emb|LT629735.1| | 1882749 | g1545 | i0 | 96.494 | 113.153333333333 | 599 | 18 | 99 | 3 | 1 | 598 | 2834017 | 2834613 | Opitutus sp. GAS368 genome assembly, chromosome: I | blastn | 67892 | 987 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. GAS368 | |
| 21960003 | 21960003 | PRJNA1129273_P_NODE_10078_length_244_cov_0.912281_g9798_i0 | PRJNA1129273 | 10078 | 244 | 0.912281 | 2.22596564 | Pedosphaera parvula | 1032527 | Bacteria | Bacteria | 268 | 2.01e-67 | NTclustered | gi|183579829|emb|AM905426.1| | 320771 | g9798 | i0 | 90.64 | 14.1516393442623 | 203 | 17 | 83 | 2 | 2 | 203 | 1433 | 1232 | Bacterium Ellin514 23S rRNA gene, isolate Ellin514 | blastn | 3453 | 268 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Pedosphaerae | Pedosphaerales | Pedosphaeraceae | Pedosphaera | Pedosphaera parvula | |
| 21960011 | 21960011 | PRJNA1129273_P_NODE_11058_length_229_cov_4.455128_g10778_i0 | PRJNA1129273 | 11058 | 229 | 4.455128 | 10.20224312 | Lacunisphaera limnophila | 1838286 | Bacteria | Bacteria | 409 | 1.0500000000000001e-109 | NTclustered | gi|1070531674|gb|CP016094.1| | 1838286 | g10778 | i0 | 99.119 | 108.938864628821 | 227 | 2 | 99 | 0 | 2 | 228 | 2558827 | 2559053 | Lacunisphaera limnophila strain IG16b, complete genome | blastn | 24947 | 409 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Lacunisphaera | Lacunisphaera limnophila | |
| 23235599 | 23235599 | PRJNA1129273_P_NODE_6479_length_280_cov_4.782609_g6199_i0 | PRJNA1129273 | 6479 | 280 | 4.782609 | 13.3913052 | Opitutus sp. GAS368 | 1882749 | Bacteria | Bacteria | 470 | 6.01e-128 | NTclustered | gi|1085764882|emb|LT629735.1| | 1882749 | g6199 | i0 | 97.122 | 133.871428571429 | 278 | 8 | 99 | 0 | 2 | 279 | 2833781 | 2834058 | Opitutus sp. GAS368 genome assembly, chromosome: I | blastn | 37484 | 470 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Opitutia | Opitutales | Opitutaceae | Opitutus | Opitutus sp. GAS368 | |
| 27734045 | 27734045 | PRJNA1129273_P_NODE_7784_length_261_cov_2.218085_g7504_i0 | PRJNA1129273 | 7784 | 261 | 2.218085 | 5.78920185 | Verrucomicrobiia bacterium | 2499141 | Bacteria | Bacteria | 77 | 4.04e-14 | NR | HYG84357.1 | 2499141 | g7504 | i0 | 55.1 | 0.896551724137931 | 78 | 33 | 89.7 | 1 | 258 | 25 | 204 | 279 | HYG84357.1 hypothetical protein [Verrucomicrobiia bacterium] | diamond | 234 | 77 | 1 | Bacteria | PVC group | Pseudomonadati | Verrucomicrobiota | Verrucomicrobiia | Verrucomicrobiia bacterium |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;