RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

8 rows where bioproject = "PRJNA1129273", tax_clade = "Discoba" and tax_phylum = "Euglenozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 8 ✖

tax_clade 1

  • Discoba · 8 ✖

bioproject 1

  • PRJNA1129273 · 8 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6134517 6134517 PRJNA1129273_P_NODE_9265_length_248_cov_0.885714_g8985_i0 PRJNA1129273 9265 248 0.885714 2.19657072 Leishmania 5658 Euglenozoa other_Eukaryota 52.8 0.022   NTclustered gi|2794772900|ref|XM_067833934.1| 5663 g8985 i0 100 0.338709677419355 28 0 11 0 83 110 1224 1197 Leishmania enriettii uncharacterized protein (CUR178_02173), partial mRNA blastn 84 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania enriettii
9211275 9211275 PRJNA1129273_P_NODE_6508_length_280_cov_1.483092_g6228_i0 PRJNA1129273 6508 280 1.483092 4.1526576 Euglena granulata 69255 Euglenozoa other_Eukaryota 207 5.2e-49   NTclustered gi|944275086|gb|KT305136.1| 69255 g6228 i0 84.434 141.185714285714 212 31 76 1 50 261 840 631 Euglena granulata strain ACOI921 large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 39532 207 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena granulata
27260048 27260048 PRJNA1129273_P_NODE_6603_length_279_cov_1.111650_g6323_i0 PRJNA1129273 6603 279 1.11165 3.1015035 Phytomonas sp. Hart1 223615 Euglenozoa other_Eukaryota 52.8 1.76e-5   NR CCW71629.1 223615 g6323 i0 34.1 0.946236559139785 88 54 90.3 2 271 20 231 318 CCW71629.1 unnamed protein product [Phytomonas sp. Hart1] diamond 264 52.8 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Phytomonas Phytomonas sp. Hart1
28385843 28385843 PRJNA1129273_P_NODE_2906_length_441_cov_1.236413_g2627_i0 PRJNA1129273 2906 441 1.236413 5.45258133 Trypanosomatidae 5654 Euglenozoa other_Eukaryota 144 1.0400000000000001e-36   NR CAD2221529.1 59799 g2627 i0 51.1 3.76190476190476 135 59 87.1 2 388 5 1826 1960 CAD2221529.1 hypothetical protein, conserved [Angomonas deanei] diamond 1659 144 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Angomonas Angomonas deanei
28996982 28996982 PRJNA1129273_P_NODE_5688_length_296_cov_1.385650_g5408_i0 PRJNA1129273 5688 296 1.38565 4.101524 Strigomonas culicis 28005 Euglenozoa other_Eukaryota 81.3 2.12e-15   NR EPY16068.1 28005 g5408 i0 41.4 1.00337837837838 99 57 99.3 1 294 1 646 744 EPY16068.1 hypothetical protein STCU_11570 [Strigomonas culicis] diamond 297 81.3 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Strigomonas Strigomonas culicis
29375543 29375543 PRJNA1129273_P_NODE_4449_length_340_cov_10.910112_g4169_i0 PRJNA1129273 4449 340 10.910112 37.0943808 Diplonema papillatum 91374 Euglenozoa other_Eukaryota 128 1.14e-35   NR KAJ9469984.1 91374 g4169 i0 55.8 1.96764705882353 113 45 95.3 2 5 328 3 115 KAJ9469984.1 hypothetical protein DIPPA_35953 [Diplonema papillatum] diamond 669 128 1 Eukaryota Discoba   Euglenozoa Diplonemea   Diplonemidae Diplonema Diplonema papillatum
30386677 30386677 PRJNA1129273_P_NODE_10493_length_242_cov_1.479290_g10213_i0 PRJNA1129273 10493 242 1.47929 3.5798818 Trypanosoma rangeli 5698 Euglenozoa other_Eukaryota 95.5 6.879999999999999e-23   NR XP_029237886.1 5698 g10213 i0 59.5 6.86776859504132 79 31 97.9 1 241 5 67 144 XP_029237886.1 60S ribosomal protein L4, partial [Trypanosoma rangeli] diamond 1662 95.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma rangeli
32378320 32378320 PRJNA1129273_P_NODE_1939_length_577_cov_1.511905_g1668_i0 PRJNA1129273 1939 577 1.511905 8.72369185 Phytomonas sp. Hart1 223615 Euglenozoa other_Eukaryota 116 3.55e-26   NR CCW71629.1 223615 g1668 i0 35 1.02426343154246 197 123 99.8 4 576 1 757 953 CCW71629.1 unnamed protein product [Phytomonas sp. Hart1] diamond 591 116 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Phytomonas Phytomonas sp. Hart1

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;