RNAquarium Metadata Server
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contig_metadata

10 rows where bioproject = "PRJNA1129273", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 10 ✖

tax_clade 1

  • Amoebozoa · 10 ✖

bioproject 1

  • PRJNA1129273 · 10 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1557838 1557838 PRJNA1129273_P_NODE_4162_length_353_cov_0.946429_g3882_i0 PRJNA1129273 4162 353 0.946429 3.34089437 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 170 2.0899999999999994e-52   NR XP_004339588.1 1257118 g3882 i0 77.9 6.27195467422096 104 23 88.4 0 41 352 5 108 XP_004339588.1 60S ribosomal protein, putative [Acanthamoeba castellanii str. Neff] diamond 2214 170 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
1557885 1557885 PRJNA1129273_P_NODE_8802_length_250_cov_1.734463_g8522_i0 PRJNA1129273 8802 250 1.734463 4.3361575 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 335 2.0099999999999996e-87   NTclustered gi|470512391|ref|XM_004352430.1| 1257118 g8522 i0 99.457 0.736 184 1 74 0 66 249 1 184 Acanthamoeba castellanii str. Neff 60s Acidic ribosomal protein (ACA1_360200), partial mRNA blastn 184 335 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
6661140 6661140 PRJNA1129273_P_NODE_6906_length_274_cov_1.303483_g6626_i0 PRJNA1129273 6906 274 1.303483 3.57154342 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 438 1.6499999999999995e-118   NTclustered gi|470531480|ref|XM_004358015.1| 1257118 g6626 i0 99.177 1.51824817518248 243 2 89 0 2 244 243 1 Acanthamoeba castellanii str. Neff ribosomal protein L31e, putative (ACA1_119160), partial mRNA blastn 416 438 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
12510395 12510395 PRJNA1129273_P_NODE_2230_length_528_cov_3.652747_g1954_i0 PRJNA1129273 2230 528 3.652747 19.28650416 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 244 8.26e-80   NR XP_004368153.1 1257118 g1954 i0 74.2 1.79545454545455 159 37 88.1 2 475 11 3 161 XP_004368153.1 ribosomal protein S17, putative [Acanthamoeba castellanii str. Neff] diamond 948 244 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
13036975 13036975 PRJNA1129273_P_NODE_6111_length_287_cov_1.224299_g5831_i0 PRJNA1129273 6111 287 1.224299 3.51373813 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 403 6.36e-108   NTclustered gi|470381772|ref|XM_004333758.1| 1257118 g5831 i0 95.652 0.881533101045296 253 8 88 3 34 286 15 264 Acanthamoeba castellanii str. Neff uncharacterized protein (ACA1_362800), partial mRNA blastn 253 403 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
15586196 15586196 PRJNA1129273_P_NODE_6633_length_278_cov_2.043902_g6353_i0 PRJNA1129273 6633 278 2.043902 5.68204756 Gocevia fonbrunei 1078849 Discosea other_Eukaryota 329 1.0599999999999998e-85   NTclustered gi|345452584|gb|JF694310.1| 1078849 g6353 i0 88.087 98.2517985611511 277 33 99 0 2 278 249 525 Gocevia fonbrunei strain ATCC 50196 clone 5 actin gene, partial cds blastn 27314 329 1 Eukaryota Amoebozoa   Discosea   Himatismenida Goceviidae Gocevia Gocevia fonbrunei
22708538 22708538 PRJNA1129273_P_NODE_8858_length_250_cov_0.875706_g8578_i0 PRJNA1129273 8858 250 0.875706 2.189265 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 152 1.54e-42   NR AAU94656.1 43142 g8578 i0 81.5 22.548 81 15 97.2 0 8 250 281 361 AAU94656.1 ef1a, partial [Acanthamoeba culbertsoni] diamond 5637 153 0.993464052287582 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba culbertsoni
27260047 27260047 PRJNA1129273_P_NODE_1243_length_763_cov_4.218841_g992_i0 PRJNA1129273 1243 763 4.218841 32.18975683 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 270 5.94e-86   NR XP_004353078.1 1257118 g992 i0 58 10.3368283093054 243 95 95.5 2 34 762 16 251 XP_004353078.1 meiotic recombinase Dmc1, putative [Acanthamoeba castellanii str. Neff] diamond 7887 270 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28175574 28175574 PRJNA1129273_P_NODE_10486_length_242_cov_1.650888_g10206_i0 PRJNA1129273 10486 242 1.650888 3.99514896 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 109 8.55e-26   NR XP_004356458.1 1257118 g10206 i0 62.5 0.991735537190083 80 30 99.2 0 240 1 342 421 XP_004356458.1 uncharacterized protein ACA1_171310 [Acanthamoeba castellanii str. Neff] diamond 240 109 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29533462 29533462 PRJNA1129273_P_NODE_8630_length_251_cov_1.719101_g8350_i0 PRJNA1129273 8630 251 1.719101 4.31494351 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 65.5 7.97e-11   NR XP_004339926.1 1257118 g8350 i0 51.2 1.02788844621514 86 34 95.6 4 3 242 52 135 XP_004339926.1 uncharacterized protein ACA1_206870 [Acanthamoeba castellanii str. Neff] diamond 258 65.5 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;