RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1126661" and tax_phylum = "Mycoplasmatota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1126661 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15058533 15058533 PRJNA1126661_P_NODE_25952_length_326_cov_3.059289_g25423_i0 PRJNA1126661 25952 326 3.059289 9.97328214 Spiroplasma 2132 Bacteria Bacteria 52.8 0.031   NTclustered gi|2208027045|gb|CP093047.1| 2138 g25423 i0 96.875 0.294478527607362 32 0 10 1 252 283 1565695 1565725 Spiroplasma poulsonii strain sHy chromosome, complete genome blastn 96 52.8 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma poulsonii
15585102 15585102 PRJNA1126661_P_NODE_18733_length_326_cov_4.154150_g18204_i0 PRJNA1126661 18733 326 4.15415 13.542529 Haploplasma axanthum 29552 Bacteria Bacteria 272 2.16e-68   NTclustered gi|1563809587|emb|LR215048.1| 29552 g18204 i0 99.333 0.923312883435583 150 1 92 0 177 326 1289001 1288852 Acholeplasma axanthum strain NCTC10138 genome assembly, chromosome: 1 blastn 301 272 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Haploplasma Haploplasma axanthum
29596236 29596236 PRJNA1126661_P_NODE_54430_length_290_cov_2.156682_g53901_i0 PRJNA1126661 54430 290 2.156682 6.2543778 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 121 1.17e-32   NR MDV3140050.1 101513 g53901 i0 57.3 0.993103448275862 96 41 99.3 0 290 3 5 100 MDV3140050.1 reverse transcriptase family protein [Candidatus Phytoplasma australasiaticum subsp. ipomoeae] diamond 288 121 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum
31745325 31745325 PRJNA1126661_P_NODE_10577_length_326_cov_6.909091_g10048_i0 PRJNA1126661 10577 326 6.909091 22.52363666 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 81.6 2.96e-17   NR MDV3185308.1 2754999 g10048 i0 79.6 0.901840490797546 49 10 45.1 0 178 324 39 87 MDV3185308.1 hypothetical protein [Candidatus Phytoplasma australasiaticum] diamond 294 81.6 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;