RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

7 rows where bioproject = "PRJNA1126661" and tax_phylum = "Microsporidia"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Microsporidia · 7 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1126661 · 7 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5385334 5385334 PRJNA1126661_P_NODE_1605_length_847_cov_5.501292_g1166_i0 PRJNA1126661 1605 847 5.501292 46.59594324 Pseudoloma neurophilia 146866 Fungi Fungi 1544 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g1166 i0 99.527 96.8819362455726 846 4 99 0 1 846 15 860 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 82059 1544 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
7935493 7935493 PRJNA1126661_P_NODE_4387_length_417_cov_4.136628_g3860_i0 PRJNA1126661 4387 417 4.136628 17.24973876 Pseudoloma neurophilia 146866 Fungi Fungi 771 0   NTclustered gi|11993647|gb|AF322654.1| 146866 g3860 i0 100 90.3693045563549 417 0 100 0 1 417 900 1316 Pseudoloma neurophilia small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 37684 771 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
23235012 23235012 PRJNA1126661_P_NODE_639_length_1684_cov_3.818746_g429_i0 PRJNA1126661 639 1684 3.818746 64.30768264 Pleistophora mulleri 249366 Fungi Fungi 1585 0   NTclustered gi|134147422|gb|EF119339.1| 249366 g429 i0 83.865 35.9649643705463 1723 209 99 57 1 1679 1375 3072 Pleistophora mulleri 16S ribosomal RNA gene, partial sequence; internal transcribed spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence blastn 60565 1585 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Pleistophora Pleistophora mulleri
28207127 28207127 PRJNA1126661_P_NODE_73366_length_245_cov_0.906977_g72836_i0 PRJNA1126661 73366 245 0.906977 2.22209365 Pseudoloma neurophilia 146866 Fungi Fungi 172 9.35e-51   NR KRH94220.1 146866 g72836 i0 100 0.991836734693878 81 0 99.2 0 245 3 20 100 KRH94220.1 hypothetical protein M153_3340007368 [Pseudoloma neurophilia] diamond 243 172 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
29407053 29407053 PRJNA1126661_P_NODE_51929_length_294_cov_2.809955_g51400_i0 PRJNA1126661 51929 294 2.809955 8.2612677 Vairimorpha apis BRL 35231 Fungi Fungi 42.7 0.0329   NR EQB62323.1 1037528 g51400 i0 33.3 0.612244897959184 60 39 61.2 1 203 24 76 134 EQB62323.1 hypothetical protein NAPIS_ORF00099 [Vairimorpha apis BRL 01] diamond 180 42.7 1 Eukaryota Opisthokonta Fungi Microsporidia     Nosematidae Vairimorpha Vairimorpha apis
31461026 31461026 PRJNA1126661_P_NODE_72976_length_246_cov_0.901734_g72446_i0 PRJNA1126661 72976 246 0.901734 2.21826564 Pseudoloma neurophilia 146866 Fungi Fungi 101 7.249999999999999e-23   NR KRH93774.1 146866 g72446 i0 94 0.817073170731707 67 4 81.7 0 1 201 388 454 KRH93774.1 hypothetical protein M153_5780002796 [Pseudoloma neurophilia] diamond 201 101 1 Eukaryota Opisthokonta Fungi Microsporidia       Pseudoloma Pseudoloma neurophilia
31935121 31935121 PRJNA1126661_P_NODE_71377_length_250_cov_1.322034_g70847_i0 PRJNA1126661 71377 250 1.322034 3.305085 Vavraia culicis subsp. floridensis 948595 Fungi Fungi 155 7.18e-47   NR XP_008073948.1 948595 g70847 i0 96.3 0.984 82 3 98.4 0 248 3 37 118 XP_008073948.1 uncharacterized protein VCUG_00927 [Vavraia culicis subsp. floridensis] diamond 246 155 1 Eukaryota Opisthokonta Fungi Microsporidia     Pleistophoridae Vavraia Vavraia culicis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;