RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1126661", tax_kingdom = "Metazoa" and tax_phylum = "Platyhelminthes"

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tax_superkingdom 1

tax_phylum 1

  • Platyhelminthes · 3 ✖

tax_kingdom 1

  • Metazoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1126661 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8683971 8683971 PRJNA1126661_P_NODE_23087_length_326_cov_3.446640_g22558_i0 PRJNA1126661 23087 326 3.44664 11.2360464 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 54.7 0.009   NTclustered gi|684412239|ref|XM_009178420.1| 6198 g22558 i0 100 0.475460122699386 29 0 9 0 181 209 2752 2724 Opisthorchis viverrini hypothetical protein partial mRNA blastn 155 54.7 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Opisthorchiida Opisthorchiidae Opisthorchis Opisthorchis viverrini
19408636 19408636 PRJNA1126661_P_NODE_73036_length_245_cov_8.296512_g72506_i0 PRJNA1126661 73036 245 8.296512 20.3264544 Spirometra erinaceieuropaei 99802 Platyhelminthes Platyhelminthes 52.8 0.022   NTclustered gi|690456898|emb|LN001175.1| 99802 g72506 i0 96.875 0.130612244897959 32 0 13 1 82 113 16408 16378 Spirometra erinaceieuropaei genome assembly S_erinaceieuropaei ,scaffold SPER_scaffold0001163 blastn 32 52.8 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Cestoda Diphyllobothriidea Diphyllobothriidae Spirometra Spirometra erinaceieuropaei
23235168 23235168 PRJNA1126661_P_NODE_82059_length_217_cov_5.652778_g81529_i0 PRJNA1126661 82059 217 5.652778 12.26652826 Schistosoma japonicum 6182 Platyhelminthes Platyhelminthes 351 1.69e-92   NTclustered gi|56757963|gb|AY815390.1| 6182 g81529 i0 95.872 120.58064516129 218 7 100 2 1 217 1579 1795 Schistosoma japonicum SJCHGC01951 protein mRNA, complete cds blastn 26166 351 1 Eukaryota Opisthokonta Metazoa Platyhelminthes Trematoda Strigeidida Schistosomatidae Schistosoma Schistosoma japonicum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;