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contig_metadata

8 rows where bioproject = "PRJNA1126661", tax_clade = "core chlorophytes" and tax_phylum = "Chlorophyta"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlorophyta · 8 ✖

tax_kingdom 1

tax_clade 1

  • core chlorophytes · 8 ✖

bioproject 1

  • PRJNA1126661 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1557188 1557188 PRJNA1126661_P_NODE_52442_length_293_cov_3.900000_g51913_i0 PRJNA1126661 52442 293 3.9 11.427 Polulichloris maxima 2704661 Plants Plants 252 2.4999999999999997e-62   NTclustered gi|2473928686|ref|NC_072905.1| 2704661 g51913 i0 97.315 91.3447098976109 149 3 99 1 4 151 126300 126152 Polulichloris maxima clone L123 chloroplast, complete genome blastn 26764 252 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Watanabeales Watanabeaceae Polulichloris Polulichloris maxima
6660279 6660279 PRJNA1126661_P_NODE_38846_length_301_cov_3.850877_g38317_i0 PRJNA1126661 38846 301 3.850877 11.59113977 Trebouxia aggregata 160068 Plants Plants 196 1.22e-45   NTclustered gi|162134372|gb|EU123990.1| 160068 g38317 i0 99.083 0.624584717607973 109 1 61 0 149 257 1290 1182 Trebouxia aggregata strain SAG 219-1d M polypeptide of photosystem I (psaM), hypothetical chloroplast RF12 (ycf12), and K protein of photosystem II (psbK) genes, complete cds; and magnesium chelatase subunit of protochlorophyllide (chlI) gene, partial cds; chloroplast blastn 188 196 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia aggregata
11760753 11760753 PRJNA1126661_P_NODE_16310_length_326_cov_4.695652_g15781_i0 PRJNA1126661 16310 326 4.695652 15.30782552 Trebouxia sp. SL0000003 3350044 Plants Plants 224 6.139999999999998e-54   NTclustered gi|2917929619|emb|OZ234907.1| 3350044 g15781 i0 93.377 0.46319018404908 151 10 46 0 176 326 4107600 4107750 Trebouxia sp. SL0000003 genome assembly, chromosome: 2 blastn 151 224 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. SL0000003
15585336 15585336 PRJNA1126661_P_NODE_38593_length_301_cov_3.947368_g38064_i0 PRJNA1126661 38593 301 3.947368 11.88157768 Tetrabaena socialis 47790 Plants Plants 139 6.33e-40   NR PNH06964.1 47790 g38064 i0 59.1 3.05980066445183 127 20 94.7 1 285 1 6 132 PNH06964.1 40S ribosomal protein S5 [Tetrabaena socialis] diamond 921 139 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Chlorophyceae Chlamydomonadales Tetrabaenaceae Tetrabaena Tetrabaena socialis
27354956 27354956 PRJNA1126661_P_NODE_37523_length_301_cov_4.447368_g36994_i0 PRJNA1126661 37523 301 4.447368 13.38657768 Coccomyxa viridis 1274662 Plants Plants 49.3 3.5e-4   NR CAK0775132.1 1274662 g36994 i0 42.2 0.448504983388704 45 26 44.9 0 14 148 297 341 CAK0775132.1 hypothetical protein CVIRNUC_004237 [Coccomyxa viridis] diamond 135 49.3 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae   Coccomyxaceae Coccomyxa Coccomyxa viridis
29333117 29333117 PRJNA1126661_P_NODE_74929_length_241_cov_2.785714_g74399_i0 PRJNA1126661 74929 241 2.785714 6.71357074 Eukaryota 2759 Plants Plants 70.9 2.43e-13   NR CAD7699508.1 121088 g74399 i0 50.8 2.75103734439834 65 32 80.9 0 46 240 37 101 CAD7699508.1 unnamed protein product [Ostreobium quekettii] diamond 663 70.9 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Ulvophyceae Bryopsidales Ostreobiaceae Ostreobium Ostreobium quekettii
30153918 30153918 PRJNA1126661_P_NODE_82612_length_215_cov_5.464789_g82082_i0 PRJNA1126661 82612 215 5.464789 11.74929635 Eukaryota 2759 Plants Plants 118 7.35e-29   NR PRW20811.1 3076 g82082 i0 82.6 45.0279069767442 69 12 96.3 0 2 208 208 276 PRW20811.1 Receptor of activated kinase C component of 40S small ribosomal subunit isoform C [Chlorella sorokiniana] diamond 9681 118 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Chlorellales Chlorellaceae Chlorella Chlorella sorokiniana
32725529 32725529 PRJNA1126661_P_NODE_48860_length_297_cov_4.794643_g48331_i0 PRJNA1126661 48860 297 4.794643 14.24008971 Trebouxia sp. C 2796353 Plants Plants 190 1.3e-56   NR KAL3153183.1 3373144 g48331 i0 83.9 1.13131313131313 112 4 99 1 2 295 180 291 KAL3153183.1 formate dehydrogenase (NAD+) [Trebouxia sp. C0009 RCD-2024] diamond 336 190 1 Eukaryota core chlorophytes Viridiplantae Chlorophyta Trebouxiophyceae Trebouxiales Trebouxiaceae Trebouxia Trebouxia sp. C0009 RCD-2024

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;