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contig_metadata

31 rows where bioproject = "PRJNA1126661", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 31 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 31 ✖

bioproject 1

  • PRJNA1126661 · 31 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
282160 282160 PRJNA1126661_P_NODE_15601_length_326_cov_4.885375_g15072_i0 PRJNA1126661 15601 326 4.885375 15.9263225 Akkermansiaceae bacterium 2562705 Bacteria Bacteria 182 3.749999999999999e-41   NTclustered gi|2022020957|gb|CP059069.1| 2562705 g15072 i0 89.041 1.17791411042945 146 16 45 0 3 148 13910 14055 Akkermansiaceae bacterium strain AJA081-3 chromosome, complete genome blastn 384 182 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae   Akkermansiaceae bacterium
2833488 2833488 PRJNA1126661_P_NODE_80843_length_222_cov_4.550336_g80313_i0 PRJNA1126661 80843 222 4.550336 10.10174592 Luteolibacter sp. Populi 3230487 Bacteria Bacteria 241 3.9200000000000003e-59   NTclustered gi|2774618348|gb|CP161812.1| 3230487 g80313 i0 88.119 0.90990990990991 202 24 91 0 1 202 367878 368079 Luteolibacter sp. Populi chromosome, complete genome blastn 202 241 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. Populi
6133571 6133571 PRJNA1126661_P_NODE_10565_length_326_cov_6.916996_g10036_i0 PRJNA1126661 10565 326 6.916996 22.54940696 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 95.5 2.35e-21   NR HTM08242.1 2499141 g10036 i0 98 1.38036809815951 50 1 46 0 2 151 170 219 HTM08242.1 ABC transporter ATP-binding protein [Verrucomicrobiia bacterium] diamond 450 95.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
7935072 7935072 PRJNA1126661_P_NODE_10707_length_326_cov_6.833992_g10178_i0 PRJNA1126661 10707 326 6.833992 22.27881392 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 153 2.14e-42   NR HXR49572.1 2499141 g10178 i0 64.6 1.16871165644172 127 26 99.4 1 326 3 265 391 HXR49572.1 DEAD/DEAH box helicase [Verrucomicrobiia bacterium] diamond 381 153 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium
7935665 7935665 PRJNA1126661_P_NODE_59167_length_279_cov_6.640777_g58638_i0 PRJNA1126661 59167 279 6.640777 18.52776783 Pseudomonadati 3379134 Bacteria Bacteria 105 4.839999999999999e-24   NR MDB6121228.1 2024890 g58638 i0 61.5 10.3655913978495 96 32 98.9 2 4 279 196 290 MDB6121228.1 sugar transporter ATP-binding protein [Pedosphaera sp.] diamond 2892 105 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.
9958942 9958942 PRJNA1126661_P_NODE_20488_length_326_cov_3.845850_g19959_i0 PRJNA1126661 20488 326 3.84585 12.537471 Verrucomicrobiota 74201 Bacteria Bacteria 94.4 5.4e-20   NR MEO8614274.1 1962973 g19959 i0 84 6.90184049079755 50 8 46 0 150 1 18 67 MEO8614274.1 GH1 family beta-glucosidase [Luteolibacter sp.] diamond 2250 95.1 0.992639327024185 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
10486298 10486298 PRJNA1126661_P_NODE_72929_length_246_cov_1.803468_g72399_i0 PRJNA1126661 72929 246 1.803468 4.43653128 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 157 5.75e-44   NR RPJ34705.1 2026800 g72399 i0 92.7 2 82 6 100 0 1 246 77 158 RPJ34705.1 MAG: dihydrolipoyl dehydrogenase [Verrucomicrobiaceae bacterium] diamond 492 157 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
11234351 11234351 PRJNA1126661_P_NODE_43169_length_300_cov_5.339207_g42640_i0 PRJNA1126661 43169 300 5.339207 16.017621 Luteolibacter soli 3135280 Bacteria Bacteria 95.5 1.65e-20   NR WP_341403726.1 3135280 g42640 i0 94 0.5 50 3 50 0 299 150 13 62 WP_341403726.1 sigma-54-dependent transcriptional regulator [Luteolibacter soli] diamond 150 95.5 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter soli
11234525 11234525 PRJNA1126661_P_NODE_74589_length_242_cov_0.923077_g74059_i0 PRJNA1126661 74589 242 0.923077 2.23384634 Akkermansia 239934 Bacteria Bacteria 246 9.32e-61   NTclustered gi|183579827|emb|AM905424.1| 239935 g74059 i0 88.945 243.409090909091 199 22 82 0 1 199 1001 1199 Akkermansia muciniphila 23S rRNA gene, strain CIP107961 blastn 58905 246 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
15585582 15585582 PRJNA1126661_P_NODE_61253_length_275_cov_2.113861_g60723_i0 PRJNA1126661 61253 275 2.113861 5.81311775 Opitutus sp. GAS368 1882749 Bacteria Bacteria 206 1.83e-48   NTclustered gi|1085764882|emb|LT629735.1| 1882749 g60723 i0 91.333 5.03272727272727 150 13 100 0 126 275 1210119 1209970 Opitutus sp. GAS368 genome assembly, chromosome: I blastn 1384 206 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Opitutus Opitutus sp. GAS368
16859738 16859738 PRJNA1126661_P_NODE_45934_length_299_cov_4.553097_g45405_i0 PRJNA1126661 45934 299 4.553097 13.61376003 Bacteria 2 Bacteria Bacteria 131 2.66e-34   NR HHY84897.1 2026799 g45405 i0 70.7 4.88628762541806 99 28 99.3 1 298 2 182 279 HHY84897.1 2-aminoethylphosphonate--pyruvate transaminase [Verrucomicrobiota bacterium] diamond 1461 131 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
21959599 21959599 PRJNA1126661_P_NODE_80098_length_225_cov_4.407895_g79568_i0 PRJNA1126661 80098 225 4.407895 9.91776375 Chthoniobacterales bacterium 2201154 Bacteria Bacteria 144 5.58e-39   NR HKS31561.1 2201154 g79568 i0 98.6 1.97333333333333 74 1 98.7 0 3 224 181 254 HKS31561.1 MmgE/PrpD family protein [Chthoniobacterales bacterium] diamond 444 144 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Spartobacteria Chthoniobacterales     Chthoniobacterales bacterium
27354961 27354961 PRJNA1126661_P_NODE_48543_length_297_cov_8.080357_g48014_i0 PRJNA1126661 48543 297 8.080357 23.99866029 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 169 1.92e-46   NR RYD19704.1 2026800 g48014 i0 82.7 0.98989898989899 98 17 99 0 296 3 451 548 RYD19704.1 MAG: hypothetical protein EOP88_17960 [Verrucomicrobiaceae bacterium] diamond 294 169 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
28049425 28049425 PRJNA1126661_P_NODE_20165_length_326_cov_3.897233_g19636_i0 PRJNA1126661 20165 326 3.897233 12.70497958 Opitutaceae bacterium 2006848 Bacteria Bacteria 67.4 5.34e-11   NR HEY1791522.1 2006848 g19636 i0 68.1 0.432515337423313 47 14 43.3 1 2 142 39 84 HEY1791522.1 hypothetical protein [Opitutaceae bacterium] diamond 141 67.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29333116 29333116 PRJNA1126661_P_NODE_47529_length_298_cov_4.462222_g47000_i0 PRJNA1126661 47529 298 4.462222 13.29742156 Bacteria 2 Bacteria Bacteria 77.8 3.2e-14   NR MBL9200481.1 2006848 g47000 i0 75.5 2.81879194630872 49 12 49.3 0 148 294 392 440 MBL9200481.1 iron-containing alcohol dehydrogenase [Opitutaceae bacterium] diamond 840 77.8 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
29627696 29627696 PRJNA1126661_P_NODE_72970_length_246_cov_0.901734_g72440_i0 PRJNA1126661 72970 246 0.901734 2.21826564 Verrucomicrobia bacterium ADurb.Bin345 1852930 Bacteria Bacteria 93.2 2.77e-20   NR OQA24399.1 1852930 g72440 i0 61.7 0.98780487804878 81 31 98.8 0 2 244 276 356 OQA24399.1 MAG: Oxygen-independent coproporphyrinogen-III oxidase 1 [Verrucomicrobia bacterium ADurb.Bin345] diamond 243 93.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobia bacterium ADurb.Bin345
29722591 29722591 PRJNA1126661_P_NODE_7830_length_326_cov_10.683794_g7301_i0 PRJNA1126661 7830 326 10.683794 34.82916844 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 75.1 2.23e-15   NR MBS0585236.1 2026799 g7301 i0 91.3 0.423312883435583 46 4 42.3 0 313 176 1 46 MBS0585236.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 138 75.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
29869876 29869876 PRJNA1126661_P_NODE_9831_length_326_cov_7.434783_g9302_i0 PRJNA1126661 9831 326 7.434783 24.23739258 Verrucomicrobiales 48461 Bacteria Bacteria 94 1.06e-19   NR MCE2960121.1 1962973 g9302 i0 92 5.98159509202454 50 4 46 0 326 177 765 814 MCE2960121.1 NAD-dependent DNA ligase LigA [Luteolibacter sp.] diamond 1950 94.7 0.992608236536431 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
29880965 29880965 PRJNA1126661_P_NODE_73711_length_244_cov_2.666667_g73181_i0 PRJNA1126661 73711 244 2.666667 6.50666748 Verrucomicrobiia bacterium Tous-C2TDCM 1982329 Bacteria Bacteria 165 7.019999999999999e-47   NR PAW64235.1 1982329 g73181 i0 93.8 0.995901639344262 81 5 99.6 0 244 2 248 328 PAW64235.1 MAG: arylsulfatase [Verrucomicrobiia bacterium Tous-C2TDCM] diamond 243 165 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium Tous-C2TDCM
29996391 29996391 PRJNA1126661_P_NODE_30731_length_325_cov_8.325397_g30202_i0 PRJNA1126661 30731 325 8.325397 27.05754025 Prosthecobacter 48463 Bacteria Bacteria 80.1 7.66e-15   NR WP_395737069.1 1965333 g30202 i0 64 1.84615384615385 50 18 46.2 0 325 176 636 685 WP_395737069.1 N-6 DNA methylase [Prosthecobacter sp.] diamond 600 80.5 0.995031055900621 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter sp.
30323635 30323635 PRJNA1126661_P_NODE_76312_length_237_cov_2.853659_g75782_i0 PRJNA1126661 76312 237 2.853659 6.76317183 Terrimicrobiaceae bacterium 2832348 Bacteria Bacteria 104 1.32e-24   NR HEY5953221.1 2832348 g75782 i0 66.2 0.936708860759494 74 25 93.7 0 14 235 74 147 HEY5953221.1 hypothetical protein [Terrimicrobiaceae bacterium] diamond 222 104 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae   Terrimicrobiaceae bacterium
30501767 30501767 PRJNA1126661_P_NODE_85093_length_207_cov_5.492537_g84563_i0 PRJNA1126661 85093 207 5.492537 11.36955159 Luteolibacter 518753 Bacteria Bacteria 124 6.07e-31   NR WP_264488032.1 1581411 g84563 i0 88.1 2.94202898550725 67 8 97.1 0 2 202 437 503 WP_264488032.1 DNA ligase D [Luteolibacter arcticus] diamond 609 124 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter arcticus
30659700 30659700 PRJNA1126661_P_NODE_37413_length_301_cov_4.504386_g36884_i0 PRJNA1126661 37413 301 4.504386 13.55820186 Verrucomicrobiota 74201 Bacteria Bacteria 85.1 9.09e-17   NR WP_246430920.1 48465 g36884 i0 77.6 2.95016611295681 49 11 48.8 0 300 154 322 370 WP_246430920.1 hypothetical protein [Prosthecobacter dejongeii] diamond 888 85.9 0.990686845168801 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Prosthecobacter Prosthecobacter dejongeii
31081470 31081470 PRJNA1126661_P_NODE_34295_length_301_cov_7.377193_g33766_i0 PRJNA1126661 34295 301 7.377193 22.20535093 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 83.2 2.12e-16   NR MDB6063787.1 2026800 g33766 i0 78.7 0.46843853820598 47 10 46.8 0 155 295 105 151 MDB6063787.1 capsular biosynthesis protein [Verrucomicrobiaceae bacterium] diamond 141 83.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31366078 31366078 PRJNA1126661_P_NODE_16696_length_326_cov_4.604743_g16167_i0 PRJNA1126661 16696 326 4.604743 15.01146218 Pedosphaera sp. 2024890 Bacteria Bacteria 73.6 2.55e-13   NR MST95384.1 2024890 g16167 i0 70.8 0.441717791411043 48 14 44.2 0 1 144 106 153 MST95384.1 DNA repair protein RecO [Pedosphaera sp.] diamond 144 73.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Pedosphaerae Pedosphaerales Pedosphaeraceae Pedosphaera Pedosphaera sp.
31429089 31429089 PRJNA1126661_P_NODE_15676_length_326_cov_4.861660_g15147_i0 PRJNA1126661 15676 326 4.86166 15.8490116 Terrimicrobium sp. 1965319 Bacteria Bacteria 103 7.19e-24   NR HEY5769319.1 1965319 g15147 i0 96 0.460122699386503 50 2 46 0 326 177 264 313 HEY5769319.1 MBL fold metallo-hydrolase [Terrimicrobium sp.] diamond 150 103 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Terrimicrobiia Terrimicrobiales Terrimicrobiaceae Terrimicrobium Terrimicrobium sp.
31429101 31429101 PRJNA1126661_P_NODE_64916_length_266_cov_3.647668_g64386_i0 PRJNA1126661 64916 266 3.647668 9.70279688 Rariglobus sp. 2706526 Bacteria Bacteria 88.2 5.19e-18   NR MDF3056509.1 2706526 g64386 i0 53.4 0.992481203007519 88 40 99.2 1 265 2 180 266 MDF3056509.1 hypothetical protein [Rariglobus sp.] diamond 264 88.2 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae Rariglobus Rariglobus sp.
31618903 31618903 PRJNA1126661_P_NODE_43496_length_300_cov_4.775330_g42967_i0 PRJNA1126661 43496 300 4.77533 14.32599 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 90.1 1.71e-18   NR RYD34569.1 2026800 g42967 i0 82 0.5 50 9 50 0 151 300 652 701 RYD34569.1 MAG: hypothetical protein EOP87_08945 [Verrucomicrobiaceae bacterium] diamond 150 90.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
31777035 31777035 PRJNA1126661_P_NODE_26597_length_326_cov_2.992095_g26068_i0 PRJNA1126661 26597 326 2.992095 9.7542297 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 56.6 1.29e-6   NR MBS0629992.1 2026799 g26068 i0 47.7 0.404907975460123 44 23 40.5 0 148 17 239 282 MBS0629992.1 SUMF1/EgtB/PvdO family nonheme iron enzyme [Verrucomicrobiota bacterium] diamond 132 56.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
31924279 31924279 PRJNA1126661_P_NODE_36737_length_301_cov_4.916667_g36208_i0 PRJNA1126661 36737 301 4.916667 14.79916767 Bacteria 2 Bacteria Bacteria 102 1.26e-25   NR MEY2550178.1 2026799 g36208 i0 98 4.06644518272425 51 1 50.8 0 301 149 10 60 MEY2550178.1 putative proteasome-type protease [Verrucomicrobiota bacterium] diamond 1224 102 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
32693900 32693900 PRJNA1126661_P_NODE_17600_length_326_cov_4.391304_g17071_i0 PRJNA1126661 17600 326 4.391304 14.31565104 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 102 7.59e-23   NR HTG43451.1 2499141 g17071 i0 94 1.11349693251534 50 3 46 0 3 152 310 359 HTG43451.1 DUF1080 domain-containing protein [Verrucomicrobiia bacterium] diamond 363 102 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;