RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1126661", tax_clade = "PVC group" and tax_phylum = "Candidatus Omnitrophota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Omnitrophota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA1126661 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19408244 19408244 PRJNA1126661_P_NODE_33336_length_301_cov_9.964912_g32807_i0 PRJNA1126661 33336 301 9.964912 29.99438512 Candidatus Omnitrophota bacterium 2035772 Bacteria Bacteria 89.7 4.47e-19   NR MBZ0166666.1 2035772 g32807 i0 82 0.498338870431894 50 9 49.8 0 300 151 97 146 MBZ0166666.1 ABC transporter ATP-binding protein [Candidatus Omnitrophota bacterium] diamond 150 89.7 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Candidatus Omnitrophota bacterium
30260146 30260146 PRJNA1126661_P_NODE_40892_length_301_cov_3.153509_g40363_i0 PRJNA1126661 40892 301 3.153509 9.49206209 Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_ 2035772 Bacteria Bacteria 105 7.54e-25   NR OGX38092.1 1801858 g40363 i0 90.4 0.51827242524916906 52 5 51.8 0 299 144 244 295 OGX38092.1 MAG: AmmeMemoRadiSam system radical SAM enzyme [Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_52_10] diamond 156 105 1 Bacteria PVC group Pseudomonadati Candidatus Omnitrophota         Omnitrophica WOR_2 bacterium RIFCSPHIGHO2_02_FULL_52_10

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;