RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1126661", tax_clade = "FCB group" and tax_phylum = "Rhodothermota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rhodothermota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1126661 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
15585345 15585345 PRJNA1126661_P_NODE_39073_length_301_cov_3.767544_g38544_i0 PRJNA1126661 39073 301 3.767544 11.34030744 Rhodothermus marinus 29549 Bacteria Bacteria 54.7 0.008   NTclustered gi|2844596544|gb|CP172416.1| 29549 g38544 i0 96.875 0.106312292358804 32 1 11 0 225 256 584937 584906 Rhodothermus marinus strain ISCAR-493 chromosome blastn 32 54.7 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rhodothermaceae Rhodothermus Rhodothermus marinus
31745328 31745328 PRJNA1126661_P_NODE_34417_length_301_cov_7.175439_g33888_i0 PRJNA1126661 34417 301 7.175439 21.59807139 Rubricoccaceae bacterium 2838334 Bacteria Bacteria 115 3.7e-28   NR HYE95073.1 2838334 g33888 i0 53.5 1.26578073089701 127 32 99.7 1 1 300 243 369 HYE95073.1 FtsX-like permease family protein [Rubricoccaceae bacterium] diamond 381 115 1 Bacteria FCB group Pseudomonadati Rhodothermota Rhodothermia Rhodothermales Rubricoccaceae   Rubricoccaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;