RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1126661", tax_clade = "FCB group" and tax_phylum = "Ignavibacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Ignavibacteriota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1126661 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4109862 4109862 PRJNA1126661_P_NODE_82424_length_216_cov_4.279720_g81894_i0 PRJNA1126661 82424 216 4.27972 9.2441952 Ignavibacterium sp. 2651167 Bacteria Bacteria 52.8 0.019   NTclustered gi|2108406931|gb|CP070637.1| 2651167 g81894 i0 100 0.12962962962963 28 0 13 0 79 106 1953461 1953488 MAG: Ignavibacterium sp. isolate bin94 chromosome blastn 28 52.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae Ignavibacterium Ignavibacterium sp.
32473352 32473352 PRJNA1126661_P_NODE_29439_length_326_cov_2.671937_g28910_i0 PRJNA1126661 29439 326 2.671937 8.71051462 Ignavibacteriaceae bacterium 2651163 Bacteria Bacteria 57.8 4.63e-7   NR MBP7543389.1 2651163 g28910 i0 54 0.460122699386503 50 23 46 0 326 177 174 223 MBP7543389.1 hypothetical protein [Ignavibacteriaceae bacterium] diamond 150 57.8 1 Bacteria FCB group Pseudomonadati Ignavibacteriota Ignavibacteria Ignavibacteriales Ignavibacteriaceae   Ignavibacteriaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;