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contig_metadata

11 rows where bioproject = "PRJNA1126198" and tax_phylum = "Synergistota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Synergistota · 11 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1126198 · 11 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1555846 1555846 PRJNA1126198_P_NODE_213942_length_288_cov_1.451163_g213221_i0 PRJNA1126198 213942 288 1.451163 4.17934944 Fretibacterium fastidiosum 651822 Bacteria Bacteria 499 7.92e-137   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g213221 i0 98.246 1.98958333333333 285 5 99 0 1 285 2439763 2440047 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 573 499 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
2832191 2832191 PRJNA1126198_P_NODE_369483_length_252_cov_0.871508_g368762_i0 PRJNA1126198 369483 252 0.871508 2.19620016 Fretibacterium fastidiosum 651822 Bacteria Bacteria 460 3.2e-125   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g368762 i0 99.605 2.00793650793651 253 0 100 1 1 252 1368017 1368269 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 506 460 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
4108616 4108616 PRJNA1126198_P_NODE_399504_length_249_cov_0.869318_g398783_i0 PRJNA1126198 399504 249 0.869318 2.16460182 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 157 1.28e-45   NR WP_299300550.1 1678694 g398783 i0 96.3 0.987951807228916 82 3 98.8 0 3 248 183 264 WP_299300550.1 phosphatidate cytidylyltransferase [uncultured Fretibacterium sp.] diamond 246 157 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
11760189 11760189 PRJNA1126198_P_NODE_395670_length_249_cov_0.886364_g394949_i0 PRJNA1126198 395670 249 0.886364 2.20704636 Fretibacterium fastidiosum 651822 Bacteria Bacteria 449 6.840000000000001e-122   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g394949 i0 99.197 4.97991967871486 249 2 100 0 1 249 2583020 2582772 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 1240 449 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
13035455 13035455 PRJNA1126198_P_NODE_459611_length_243_cov_0.911765_g458890_i0 PRJNA1126198 459611 243 0.911765 2.21558895 Fretibacterium fastidiosum 651822 Bacteria Bacteria 444 3.09e-120   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g458890 i0 99.588 2 243 1 100 0 1 243 586527 586769 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 486 444 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
23233877 23233877 PRJNA1126198_P_NODE_376779_length_251_cov_0.876404_g376058_i0 PRJNA1126198 376779 251 0.876404 2.19977404 Fretibacterium fastidiosum 651822 Bacteria Bacteria 459 1.1499999999999996e-124   NTclustered gi|2869663113|emb|OZ209244.1| 651822 g376058 i0 99.602 2 251 1 100 0 1 251 2126263 2126013 Fretibacterium fastidiosum strain SGP1 genome assembly, chromosome: Ff3 blastn 502 459 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium Fretibacterium fastidiosum
29154787 29154787 PRJNA1126198_P_NODE_448069_length_244_cov_0.912281_g447348_i0 PRJNA1126198 448069 244 0.912281 2.22596564 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 104 1.4e-26   NR WP_299076430.1 1678694 g447348 i0 94.5 0.676229508196721 55 3 67.6 0 79 243 1 55 WP_299076430.1 phage tail protein [uncultured Fretibacterium sp.] diamond 165 104 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
29344027 29344027 PRJNA1126198_P_NODE_377089_length_251_cov_0.876404_g376368_i0 PRJNA1126198 377089 251 0.876404 2.19977404 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 106 3.03e-25   NR WP_299075276.1 1678694 g376368 i0 84.6 0.776892430278884 65 10 77.7 0 249 55 187 251 WP_299075276.1 flagellar motor switch protein FliN [uncultured Fretibacterium sp.] diamond 195 106 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
29817394 29817394 PRJNA1126198_P_NODE_343571_length_256_cov_1.661202_g342850_i0 PRJNA1126198 343571 256 1.661202 4.25267712 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 129 1.59e-32   NR WP_299075792.1 1678694 g342850 i0 80 0.99609375 85 17 99.6 0 1 255 196 280 WP_299075792.1 Synerg-CTERM sorting domain-containing protein [uncultured Fretibacterium sp.] diamond 255 129 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.
31018211 31018211 PRJNA1126198_P_NODE_479355_length_236_cov_2.822086_g478634_i0 PRJNA1126198 479355 236 2.822086 6.66012296 Synergistota bacterium 2268202 Bacteria Bacteria 76.6 2.93e-14   NR MDI9393285.1 2268202 g478634 i0 52.1 0.902542372881356 71 34 90.3 0 9 221 16 86 MDI9393285.1 hypothetical protein [Synergistota bacterium] diamond 213 76.6 1 Bacteria   Thermotogati Synergistota         Synergistota bacterium
31903515 31903515 PRJNA1126198_P_NODE_357157_length_253_cov_1.733333_g356436_i0 PRJNA1126198 357157 253 1.733333 4.38533249 uncultured Fretibacterium sp. 1678694 Bacteria Bacteria 124 7.159999999999999e-31   NR WP_299080492.1 1678694 g356436 i0 86.1 2.92885375494071 79 11 93.7 0 17 253 1 79 WP_299080492.1 methyl-accepting chemotaxis protein, partial [uncultured Fretibacterium sp.] diamond 741 124 1 Bacteria   Thermotogati Synergistota Synergistia Synergistales Aminobacteriaceae Fretibacterium uncultured Fretibacterium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;