RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

1 row where bioproject = "PRJNA1126198" and tax_phylum = "Candidatus Latescibacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Latescibacterota · 1 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1126198 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17608163 17608163 PRJNA1126198_P_NODE_457954_length_243_cov_0.917647_g457233_i0 PRJNA1126198 457954 243 0.917647 2.22988221 Bacteria 2 Bacteria Bacteria 71.3 6.05e-8   NTclustered gi|2518550840|emb|OX638317.1| 199737 g457233 i0 100 0.469135802469136 38 0 16 0 107 144 4127221 4127258 MAG: uncultured Latescibacteria bacterium isolate cbbe8a84-e08a-4d06-a76e-2eb930d8ff24 genome assembly, chromosome: 1 blastn 114 71.3 1 Bacteria FCB group Pseudomonadati Candidatus Latescibacterota         uncultured Latescibacterota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;