RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1126198" and tax_phylum = "Candidatus Altimarinota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Altimarinota · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA1126198 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
17607937 17607937 PRJNA1126198_P_NODE_220974_length_286_cov_1.455399_g220253_i0 PRJNA1126198 220974 286 1.455399 4.16244114 Bacteria 2 Bacteria Bacteria 171 5.7e-49   NR RKW21385.1 2044595 g220253 i0 90.5 1.99300699300699 95 9 99.7 0 2 286 173 267 RKW21385.1 MAG: molecular chaperone DnaK, partial [Candidatus Altimarinota bacterium] diamond 570 171 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
27153786 27153786 PRJNA1126198_P_NODE_495982_length_200_cov_4.881890_g495260_i0 PRJNA1126198 495982 200 4.88189 9.76378 Bacteria 2 Bacteria Bacteria 66.6 1.43e-11   NR RKW22733.1 2044595 g495260 i0 100 1.44 32 0 48 0 97 2 1 32 RKW22733.1 MAG: elongation factor 4, partial [Candidatus Altimarinota bacterium] diamond 288 66.6 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium
29028522 29028522 PRJNA1126198_P_NODE_448148_length_244_cov_0.906433_g447427_i0 PRJNA1126198 448148 244 0.906433 2.21169652 Candidatus Altimarinota bacterium 2044595 Bacteria Bacteria 53.5 6.05e-7   NR RKW24538.1 2044595 g447427 i0 85.3 0.418032786885246 34 5 41.8 0 103 2 1 34 RKW24538.1 MAG: DUF4298 domain-containing protein [Candidatus Altimarinota bacterium] diamond 102 53.5 1 Bacteria Bacteria candidate phyla   Candidatus Altimarinota         Candidatus Altimarinota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;