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contig_metadata

24 rows where bioproject = "PRJNA1126198", tax_kingdom = "Pseudomonadati" and tax_phylum = "Bdellovibrionota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Bdellovibrionota · 24 ✖

tax_kingdom 1

  • Pseudomonadati · 24 ✖

bioproject 1

  • PRJNA1126198 · 24 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2832115 2832115 PRJNA1126198_P_NODE_333523_length_258_cov_1.675676_g332802_i0 PRJNA1126198 333523 258 1.675676 4.32324408 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 344 3.46e-90   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g332802 i0 90.734 207.197674418605 259 23 100 1 1 258 3446176 3446434 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 53457 344 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
4108584 4108584 PRJNA1126198_P_NODE_386564_length_250_cov_0.881356_g385843_i0 PRJNA1126198 386564 250 0.881356 2.20339 Peredibacter starrii 28202 Bacteria Bacteria 92.4 6.77e-20   NR WP_407676976.1 28202 g385843 i0 100 3.864 46 0 55.2 0 139 2 1 46 WP_407676976.1 methionine adenosyltransferase [Peredibacter starrii] diamond 966 92.4 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
6659122 6659122 PRJNA1126198_P_NODE_248046_length_278_cov_2.629268_g247325_i0 PRJNA1126198 248046 278 2.629268 7.30936504 Bdellovibrio sp. HCB337 3394358 Bacteria Bacteria 381 2.869999999999999e-101   NTclustered gi|2895525383|gb|CP178621.1| 3394358 g247325 i0 91.667 86.7158273381295 276 22 99 1 1 276 3446707 3446981 Bdellovibrio sp. HCB337 chromosome, complete genome blastn 24107 381 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HCB337
16858924 16858924 PRJNA1126198_P_NODE_439234_length_245_cov_0.901163_g438513_i0 PRJNA1126198 439234 245 0.901163 2.20784935 Pseudobdellovibrionaceae bacterium 2026715 Bacteria Bacteria 231 2.65e-56   NTclustered gi|2258818259|gb|CP060220.1| 2026715 g438513 i0 84.17 87.8367346938775 259 19 97 9 1 238 3251898 3251641 MAG: Pseudobdellovibrionaceae bacterium isolate HK-STAS-BDEL-7 chromosome blastn 21520 231 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae   Pseudobdellovibrionaceae bacterium
21432388 21432388 PRJNA1126198_P_NODE_442677_length_244_cov_1.812865_g441956_i0 PRJNA1126198 442677 244 1.812865 4.4233906 Peredibacter 263370 Bacteria Bacteria 446 8.639999999999999e-121   NTclustered gi|2631252187|gb|CP139487.1| 28202 g441956 i0 99.59 236.635245901639 244 1 100 0 1 244 511286 511529 Peredibacter starrii strain A3.12 chromosome, complete genome blastn 57739 446 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
21957944 21957944 PRJNA1126198_P_NODE_173798_length_302_cov_2.860262_g173078_i0 PRJNA1126198 173798 302 2.860262 8.63799124 Bdellovibrio reynosensis 2835041 Bacteria Bacteria 460 3.94e-125   NTclustered gi|2216477995|gb|CP093442.1| 2835041 g173078 i0 94.098 217.228476821192 305 14 100 4 1 302 950548 950245 Bdellovibrio reynosensis strain LBG001 chromosome, complete genome blastn 65603 460 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio reynosensis
23982610 23982610 PRJNA1126198_P_NODE_329099_length_259_cov_1.661290_g328378_i0 PRJNA1126198 329099 259 1.66129 4.3027411 Bdellovibrio 958 Bacteria Bacteria 217 7.9e-52   NTclustered gi|2800920897|gb|CP168968.1| 959 g328378 i0 81.992 165.362934362934 261 42 99 4 2 259 778137 777879 Bdellovibrio bacteriovorus strain Bd5 chromosome, complete genome blastn 42829 219 0.990867579908676 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
25256543 25256543 PRJNA1126198_P_NODE_17920_length_506_cov_1.898383_g17230_i0 PRJNA1126198 17920 506 1.898383 9.60581798 Bdellovibrio 958 Bacteria Bacteria 658 0   NTclustered gi|2800917394|gb|CP168972.1| 959 g17230 i0 90.335 200.719367588933 507 41 99 8 1 504 748374 748875 Bdellovibrio bacteriovorus strain Bd19 chromosome, complete genome blastn 101564 664 0.990963855421687 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio bacteriovorus
26658533 26658533 PRJNA1126198_P_NODE_370341_length_252_cov_0.865922_g369620_i0 PRJNA1126198 370341 252 0.865922 2.18212344 Bdellovibrio sp. 28201 Bacteria Bacteria 144 3.88e-40   NR MBC7465365.1 28201 g369620 i0 77.1 0.988095238095238 83 19 98.8 0 251 3 187 269 MBC7465365.1 hypothetical protein [Bdellovibrio sp.] diamond 249 144 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
26912011 26912011 PRJNA1126198_P_NODE_430382_length_246_cov_0.867052_g429661_i0 PRJNA1126198 430382 246 0.867052 2.13294792 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 74.7 3.12e-15   NR HMN67913.1 2053517 g429661 i0 60.3 0.707317073170732 58 23 70.7 0 73 246 16 73 HMN67913.1 DNA-processing protein DprA [Bdellovibrionales bacterium] diamond 174 74.7 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27070237 27070237 PRJNA1126198_P_NODE_293722_length_267_cov_1.587629_g293001_i0 PRJNA1126198 293722 267 1.587629 4.23896943 Bacteriovorax sp. 2608087 Bacteria Bacteria 152 2.0999999999999996e-41   NR MBC7711885.1 2608087 g293001 i0 78.4 1.97752808988764 88 19 98.9 0 1 264 94 181 MBC7711885.1 bifunctional metallophosphatase/5'-nucleotidase [Bacteriovorax sp.] diamond 528 152 1 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Bacteriovorax Bacteriovorax sp.
27544271 27544271 PRJNA1126198_P_NODE_354184_length_254_cov_1.359116_g353463_i0 PRJNA1126198 354184 254 1.359116 3.45215464 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 110 6.29e-26   NR MBX3022343.1 2053517 g353463 i0 61.7 0.956692913385827 81 31 95.7 0 10 252 393 473 MBX3022343.1 penicillin acylase family protein [Bdellovibrionales bacterium] diamond 243 110 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
27891407 27891407 PRJNA1126198_P_NODE_460525_length_243_cov_0.905882_g459804_i0 PRJNA1126198 460525 243 0.905882 2.20129326 Pseudobdellovibrio sp. 2862747 Bacteria Bacteria 52.8 1.8e-6   NR MEQ1722613.1 2862747 g459804 i0 65.9 0.54320987654321 44 15 54.3 0 109 240 1 44 MEQ1722613.1 hypothetical protein [Pseudobdellovibrio sp.] diamond 132 52.8 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Pseudobdellovibrio Pseudobdellovibrio sp.
28112465 28112465 PRJNA1126198_P_NODE_488825_length_229_cov_2.673077_g488104_i0 PRJNA1126198 488825 229 2.673077 6.12134633 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 84 9.64e-18   NR MEW6058194.1 3034175 g488104 i0 80.8 1.37554585152838 52 10 68.1 0 1 156 173 224 MEW6058194.1 ABC transporter ATP-binding protein [Bdellovibrionota bacterium] diamond 315 84 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28144357 28144357 PRJNA1126198_P_NODE_440565_length_245_cov_0.877907_g439844_i0 PRJNA1126198 440565 245 0.877907 2.15087215 Bdellovibrio sp. 28201 Bacteria Bacteria 44.3 0.0111   NR PWU19774.1 28201 g439844 i0 55.9 0.416326530612245 34 15 41.6 0 3 104 16 49 PWU19774.1 MAG: hypothetical protein C5B49_05200 [Bdellovibrio sp.] diamond 102 44.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp.
28175541 28175541 PRJNA1126198_P_NODE_468826_length_242_cov_0.923077_g468105_i0 PRJNA1126198 468826 242 0.923077 2.23384634 Bdellovibrio sp. HAGR 28201 Bacteria Bacteria 54.3 2.38e-6   NR BFD69049.1 3113895 g468105 i0 40.3 0.954545454545455 77 46 95.5 0 235 5 113 189 BFD69049.1 hypothetical protein HAGR004_40710 [Bdellovibrio sp. HAGR004] diamond 231 54.3 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales Pseudobdellovibrionaceae Bdellovibrio Bdellovibrio sp. HAGR004
28428384 28428384 PRJNA1126198_P_NODE_444226_length_244_cov_1.409357_g443505_i0 PRJNA1126198 444226 244 1.409357 3.43883108 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 82 1.42e-16   NR MEK6772611.1 3034175 g443505 i0 76.5 0.627049180327869 51 12 62.7 0 90 242 1 51 MEK6772611.1 hypothetical protein [Bdellovibrionota bacterium] diamond 153 82 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
28586377 28586377 PRJNA1126198_P_NODE_372927_length_251_cov_1.741573_g372206_i0 PRJNA1126198 372927 251 1.741573 4.37134823 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 116 1.52e-29   NR MEK6774396.1 3034175 g372206 i0 68.7 0.99203187250996006 83 26 99.2 0 3 251 95 177 MEK6774396.1 hypothetical protein [Bdellovibrionota bacterium] diamond 249 116 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
29344028 29344028 PRJNA1126198_P_NODE_379989_length_251_cov_0.865169_g379268_i0 PRJNA1126198 379989 251 0.865169 2.17157419 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 53.9 3.88e-6   NR HMN68375.1 2053517 g379268 i0 81.3 0.382470119521912 32 6 38.2 0 65 160 246 277 HMN68375.1 flagellin [Bdellovibrionales bacterium] diamond 96 53.9 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium
30702152 30702152 PRJNA1126198_P_NODE_421714_length_246_cov_1.803468_g420993_i0 PRJNA1126198 421714 246 1.803468 4.43653128 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 110 3.29e-26   NR HEY8279479.1 3034175 g420993 i0 68 0.914634146341463 75 24 91.5 0 21 245 8 82 HEY8279479.1 long-chain fatty acid--CoA ligase [Bdellovibrionota bacterium] diamond 225 110 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
30702158 30702158 PRJNA1126198_P_NODE_446254_length_244_cov_0.912281_g445533_i0 PRJNA1126198 446254 244 0.912281 2.22596564 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 107 3.62e-27   NR MEK6772640.1 3034175 g445533 i0 87.9 0.713114754098361 58 7 71.3 0 175 2 1 58 MEK6772640.1 nitroreductase family protein [Bdellovibrionota bacterium] diamond 174 107 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
31639533 31639533 PRJNA1126198_P_NODE_379076_length_251_cov_0.870787_g378355_i0 PRJNA1126198 379076 251 0.870787 2.18567537 Peredibacter 263370 Bacteria Bacteria 139 1.6199999999999996e-40   NR WP_321393711.1 28202 g378355 i0 86.5 2.65338645418327 74 10 88.4 0 3 224 50 123 WP_321393711.1 TraR/DksA family transcriptional regulator [Peredibacter starrii] diamond 666 140 0.992857142857143 Bacteria   Pseudomonadati Bdellovibrionota Bacteriovoracia Bacteriovoracales Bacteriovoracaceae Peredibacter Peredibacter starrii
32156852 32156852 PRJNA1126198_P_NODE_217198_length_287_cov_1.457944_g216477_i0 PRJNA1126198 217198 287 1.457944 4.18429928 Bdellovibrionota bacterium 3034175 Bacteria Bacteria 99 2.94e-22   NR MEK6773955.1 3034175 g216477 i0 76.7 0.627177700348432 60 14 62.7 0 2 181 297 356 MEK6773955.1 branched-chain amino acid aminotransferase [Bdellovibrionota bacterium] diamond 180 99 1 Bacteria   Pseudomonadati Bdellovibrionota         Bdellovibrionota bacterium
32568269 32568269 PRJNA1126198_P_NODE_339699_length_257_cov_1.331522_g338978_i0 PRJNA1126198 339699 257 1.331522 3.42201154 Bdellovibrionales bacterium 2053517 Bacteria Bacteria 139 3.72e-36   NR MBY0315255.1 2053517 g338978 i0 77.6 0.992217898832685 85 19 99.2 0 256 2 6942 7026 MBY0315255.1 choice-of-anchor D domain-containing protein [Bdellovibrionales bacterium] diamond 255 139 1 Bacteria   Pseudomonadati Bdellovibrionota Bdellovibrionia Bdellovibrionales     Bdellovibrionales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;