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contig_metadata

12 rows where bioproject = "PRJNA1126198", tax_kingdom = "Metazoa" and tax_phylum = "Nematoda"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 12 ✖

tax_kingdom 1

  • Metazoa · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA1126198 · 12 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
281087 281087 PRJNA1126198_P_NODE_12521_length_556_cov_6.766046_g11841_i0 PRJNA1126198 12521 556 6.766046 37.61921576 Opisthokonta 33154 Nematoda Nematoda 216 2.6199999999999993e-68   NR KFD50978.1 68888 g11841 i0 71.6 17.0773381294964 148 42 79.9 0 546 103 51 198 KFD50978.1 hypothetical protein M513_08161, partial [Trichuris suis] diamond 9495 216 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris suis
281587 281587 PRJNA1126198_P_NODE_39741_length_418_cov_6.684058_g39027_i0 PRJNA1126198 39741 418 6.684058 27.93936244 Pristionchus hoplostomus 1355913 Nematoda Nematoda 167 1.38e-36   NTclustered gi|524845312|gb|KC819366.1| 1355913 g39027 i0 81.166 31.9090909090909 223 28 52 11 133 348 264 49 Pristionchus hoplostomus strain JU1090 subunit ribosomal protein 20 (rps-20) mRNA, partial cds blastn 13338 167 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus hoplostomus
10484623 10484623 PRJNA1126198_P_NODE_16409_length_517_cov_2.693694_g15721_i0 PRJNA1126198 16409 517 2.693694 13.92639798 Metazoa 33208 Nematoda Nematoda 139 3.2e-35   NR KAH7732279.1 70226 g15721 i0 57.5 3.63249516441006 120 44 65.6 1 409 71 26 145 KAH7732279.1 procollagen-proline dioxygenase beta subunit [Aphelenchoides avenae] diamond 1878 140 0.992857142857143 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Aphelenchoididae Aphelenchoides Aphelenchoides avenae
10484685 10484685 PRJNA1126198_P_NODE_195789_length_294_cov_1.398190_g195069_i0 PRJNA1126198 195789 294 1.39819 4.1106786 Caenorhabditis remanei 31234 Nematoda Nematoda 191 5.54e-44   NTclustered gi|2445372511|ref|XM_053729906.1| 31234 g195069 i0 80.315 64.8333333333333 254 48 86 2 42 294 616 868 Caenorhabditis remanei uncharacterized protein (GCK72_013604), partial mRNA blastn 19061 191 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis remanei
10485152 10485152 PRJNA1126198_P_NODE_41649_length_414_cov_1.797654_g40933_i0 PRJNA1126198 41649 414 1.797654 7.44228756 Pristionchus fukushimae 1355912 Nematoda Nematoda 202 3.73e-47   NTclustered gi|524845342|gb|KC819381.1| 1355912 g40933 i0 81.154 12.3792270531401 260 41 62 8 110 365 307 52 Pristionchus fukushimae strain RS5595 subunit ribosomal protein 30 (rpl-30) mRNA, partial cds blastn 5125 202 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus fukushimae
15584197 15584197 PRJNA1126198_P_NODE_25013_length_466_cov_11.269720_g24312_i0 PRJNA1126198 25013 466 11.26972 52.5168952 Pristionchus pauli 376545 Nematoda Nematoda 292 2.4499999999999994e-74   NTclustered gi|150982019|gb|EF634598.1| 376545 g24312 i0 81.492 4.8412017167382 362 61 77 6 42 400 395 37 Pristionchus pauli large subunit ribosomal protein 23 (rpl-23) mRNA, partial cds blastn 2256 292 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus pauli
27006866 27006866 PRJNA1126198_P_NODE_439142_length_245_cov_0.901163_g438421_i0 PRJNA1126198 439142 245 0.901163 2.20784935 Onchocerca flexuosa 387005 Nematoda Nematoda 42.7 0.0171   NR VDO76253.1 387005 g438421 i0 35.7 0.685714285714286 56 34 66.1 1 172 11 69 124 VDO76253.1 unnamed protein product [Onchocerca flexuosa] diamond 168 42.7 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Onchocerca Onchocerca flexuosa
27038623 27038623 PRJNA1126198_P_NODE_156862_length_310_cov_1.253165_g156143_i0 PRJNA1126198 156862 310 1.253165 3.8848115 Gongylonema pulchrum 637853 Nematoda Nematoda 82.4 5.21e-17   NR VDN42280.1 637853 g156143 i0 49.3 2.05161290322581 71 36 68.7 0 55 267 46 116 VDN42280.1 unnamed protein product [Gongylonema pulchrum] diamond 636 82.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Gongylonematidae Gongylonema Gongylonema pulchrum
27323181 27323181 PRJNA1126198_P_NODE_392743_length_249_cov_1.653409_g392022_i0 PRJNA1126198 392743 249 1.653409 4.11698841 Caenorhabditis nigoni 1611254 Nematoda Nematoda 64.3 1.05e-9   NR PIC31138.1 1611254 g392022 i0 47.2 0.63855421686747 53 26 63.9 1 88 246 928 978 PIC31138.1 hypothetical protein B9Z55_022143 [Caenorhabditis nigoni] diamond 159 64.3 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Caenorhabditis Caenorhabditis nigoni
27891419 27891419 PRJNA1126198_P_NODE_91805_length_349_cov_1.398551_g91087_i0 PRJNA1126198 91805 349 1.398551 4.88094299 Pristionchus entomophagus 358040 Nematoda Nematoda 55.5 4.39e-6   NR GMS90602.1 358040 g91087 i0 32.3 2.13180515759312 124 73 97.1 3 6 344 909 1032 GMS90602.1 hypothetical protein PENTCL1PPCAC_12777 [Pristionchus entomophagus] diamond 744 55.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Pristionchus Pristionchus entomophagus
31302582 31302582 PRJNA1126198_P_NODE_346095_length_255_cov_4.131868_g345374_i0 PRJNA1126198 346095 255 4.131868 10.5362634 Trichuris trichiura 36087 Nematoda Nematoda 57 6.1e-8   NR CDW57102.1 36087 g345374 i0 39.5 3.88235294117647 81 43 95.3 1 243 1 16 90 CDW57102.1 leptin receptor protein [Trichuris trichiura] diamond 990 57 1 Eukaryota Opisthokonta Metazoa Nematoda Enoplea Trichinellida Trichuridae Trichuris Trichuris trichiura
32662275 32662275 PRJNA1126198_P_NODE_377740_length_251_cov_0.876404_g377019_i0 PRJNA1126198 377740 251 0.876404 2.19977404 Acanthocheilonema viteae 6277 Nematoda Nematoda 50.1 1.1e-4   NR VBB25879.1 6277 g377019 i0 48.1 2.53386454183267 54 24 64.5 1 251 90 1035 1084 VBB25879.1 unnamed protein product [Acanthocheilonema viteae] diamond 636 50.1 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Onchocercidae Acanthocheilonema Acanthocheilonema viteae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;