RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

6 rows where bioproject = "PRJNA1126198", tax_kingdom = "Bacillati" and tax_phylum = "Armatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Armatimonadota · 6 ✖

tax_kingdom 1

  • Bacillati · 6 ✖

bioproject 1

  • PRJNA1126198 · 6 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4858557 4858557 PRJNA1126198_P_NODE_5944_length_725_cov_2.349693_g5321_i0 PRJNA1126198 5944 725 2.349693 17.03527425 Fimbriimonas 1005038 Bacteria Bacteria 1024 0   NTclustered gi|663071213|gb|CP007139.1| 661478 g5321 i0 92.372 221.201379310345 721 51 99 3 5 725 28225 28941 Fimbriimonas ginsengisoli Gsoil 348, complete genome blastn 160371 1024 1 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas ginsengisoli
7408210 7408210 PRJNA1126198_P_NODE_322826_length_260_cov_2.502674_g322105_i0 PRJNA1126198 322826 260 2.502674 6.5069524 Armatimonadota bacterium 2033014 Bacteria Bacteria 154 3.8e-44   NR NLN78885.1 2033014 g322105 i0 88.4 1.98461538461538 86 10 99.2 0 259 2 95 180 NLN78885.1 ABC transporter ATP-binding protein [Armatimonadota bacterium] diamond 516 154 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
9209725 9209725 PRJNA1126198_P_NODE_4528_length_836_cov_3.910878_g3971_i0 PRJNA1126198 4528 836 3.910878 32.69494008 uncultured Armatimonadetes bacterium 157466 Bacteria Bacteria 573 1.4499999999999995e-158   NTclustered gi|2874254000|emb|OY970325.1| 157466 g3971 i0 79.481 566.74043062201 848 142 100 29 1 836 1306083 1305256 MAG: uncultured Armatimonadetes bacterium isolate MFD05942.bin.1.84 genome assembly, chromosome: 1 blastn 473795 573 1 Bacteria   Bacillati Armatimonadota         uncultured Armatimonadetes bacterium
27323173 27323173 PRJNA1126198_P_NODE_291363_length_268_cov_1.087179_g290642_i0 PRJNA1126198 291363 268 1.087179 2.91363972 Armatimonadota bacterium 2033014 Bacteria Bacteria 101 1.2e-22   NR MES2460552.1 2033014 g290642 i0 49.4 0.996268656716418 89 45 99.6 0 1 267 109 197 MES2460552.1 hypothetical protein [Armatimonadota bacterium] diamond 267 101 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium
30912638 30912638 PRJNA1126198_P_NODE_413274_length_247_cov_1.431034_g412553_i0 PRJNA1126198 413274 247 1.431034 3.53465398 Fimbriimonas 1005038 Bacteria Bacteria 121 1.83e-30   NR HSI73297.1 1936159 g412553 i0 68.8 8.74493927125506 80 25 97.2 0 245 6 368 447 HSI73297.1 chromosomal replication initiator protein DnaA [Fimbriimonas sp.] diamond 2160 122 0.991803278688525 Bacteria   Bacillati Armatimonadota Fimbriimonadia Fimbriimonadales Fimbriimonadaceae Fimbriimonas Fimbriimonas sp.
32662278 32662278 PRJNA1126198_P_NODE_396820_length_249_cov_0.886364_g396099_i0 PRJNA1126198 396820 249 0.886364 2.20704636 Armatimonadota bacterium 2033014 Bacteria Bacteria 108 1.37e-26   NR MCH7945476.1 2033014 g396099 i0 59.5 0.951807228915663 79 32 95.2 0 248 12 187 265 MCH7945476.1 hypothetical protein [Armatimonadota bacterium] diamond 237 108 1 Bacteria   Bacillati Armatimonadota         Armatimonadota bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;