RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1126198", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 4 ✖

tax_clade 1

  • delta/epsilon subdivisions · 4 ✖

bioproject 1

  • PRJNA1126198 · 4 ✖

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7934511 7934511 PRJNA1126198_P_NODE_362287_length_253_cov_0.866667_g361566_i0 PRJNA1126198 362287 253 0.866667 2.19266751 Lujinxingiaceae bacterium 2946527 Bacteria Bacteria 70.5 6.32e-12   NR MBA2661457.1 2946527 g361566 i0 66 3.81818181818182 50 17 59.3 0 150 1 3 52 MBA2661457.1 cysteine desulfurase [Lujinxingiaceae bacterium] diamond 966 70.5 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria Bradymonadales Lujinxingiaceae   Lujinxingiaceae bacterium
9209604 9209604 PRJNA1126198_P_NODE_403248_length_248_cov_1.422857_g402527_i0 PRJNA1126198 403248 248 1.422857 3.52868536 uncultured delta proteobacterium 34034 Bacteria Bacteria 124 4.6899999999999996e-24   NTclustered gi|2874253888|emb|OY970063.1| 34034 g402527 i0 82.979 2.04838709677419 141 20 56 4 1 138 747430 747569 MAG: uncultured delta proteobacterium isolate MFD10007.bin.1.119 genome assembly, chromosome: 1 blastn 508 124 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
27859813 27859813 PRJNA1126198_P_NODE_432985_length_245_cov_1.715116_g432264_i0 PRJNA1126198 432985 245 1.715116 4.2020342 delta proteobacterium ML8_D 1775672 Bacteria Bacteria 102 1.13e-26   NR OPL14562.1 1775672 g432264 i0 87 0.661224489795918 54 7 66.1 0 243 82 23 76 OPL14562.1 MAG: addiction module antitoxin [delta proteobacterium ML8_D] diamond 162 102 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       delta proteobacterium ML8_D
31492547 31492547 PRJNA1126198_P_NODE_285076_length_269_cov_1.581633_g284355_i0 PRJNA1126198 285076 269 1.581633 4.25459277 SAR324 cluster bacterium 2024889 Bacteria Bacteria 44.3 0.0142   NR MEC8544339.1 2024889 g284355 i0 37.7 0.769516728624535 69 39 74.7 2 201 1 243 309 MEC8544339.1 NHL repeat-containing protein [SAR324 cluster bacterium] diamond 207 44.3 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;