RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1126198", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 6 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 6 ✖

bioproject 1

  • PRJNA1126198 · 6 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1556252 1556252 PRJNA1126198_P_NODE_416542_length_247_cov_0.896552_g415821_i0 PRJNA1126198 416542 247 0.896552 2.21448344 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 351 1.97e-92   NTclustered gi|2874253728|emb|OY969570.1| 412054 g415821 i0 92.308 1 247 19 100 0 1 247 3177349 3177595 MAG: uncultured Gemmatimonadales bacterium isolate MFD02840.bin.c.1 genome assembly, chromosome: 1 blastn 247 351 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
1556317 1556317 PRJNA1126198_P_NODE_438382_length_245_cov_0.901163_g437661_i0 PRJNA1126198 438382 245 0.901163 2.20784935 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 392 1.15e-104   NTclustered gi|2874253978|emb|OY970303.1| 412054 g437661 i0 95.547 233.689795918367 247 7 100 4 1 245 1902657 1902413 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 57254 392 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
13035215 13035215 PRJNA1126198_P_NODE_362471_length_253_cov_0.866667_g361750_i0 PRJNA1126198 362471 253 0.866667 2.19266751 Longimicrobium sp. 2029185 Bacteria Bacteria 115 3.04e-28   NR HLM68327.1 2029185 g361750 i0 71.6 2.88142292490119 81 21 93.7 1 15 251 280 360 HLM68327.1 CHAD domain-containing protein [Longimicrobium sp.] diamond 729 115 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.
30386627 30386627 PRJNA1126198_P_NODE_312013_length_263_cov_1.331579_g311292_i0 PRJNA1126198 312013 263 1.331579 3.50205277 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 125 6.049999999999999e-32   NR HEX5818952.1 2448054 g311292 i0 72.4 0.992395437262357 87 23 99.2 1 3 263 78 163 HEX5818952.1 FAD-binding oxidoreductase [Gemmatimonadales bacterium] diamond 261 125 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31081430 31081430 PRJNA1126198_P_NODE_267015_length_274_cov_1.004975_g266294_i0 PRJNA1126198 267015 274 1.004975 2.7536315 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.1 0.0381   NR HYK10447.1 2448054 g266294 i0 36.7 0.864963503649635 79 48 86.5 2 274 38 179 255 HYK10447.1 glycosyltransferase family 4 protein [Gemmatimonadales bacterium] diamond 237 43.1 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31239206 31239206 PRJNA1126198_P_NODE_405795_length_248_cov_0.891429_g405074_i0 PRJNA1126198 405795 248 0.891429 2.21074392 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 100 7.749999999999999e-23   NR MBA3556110.1 2448054 g405074 i0 90.2 0.616935483870968 51 5 61.7 0 3 155 320 370 MBA3556110.1 IS701 family transposase [Gemmatimonadales bacterium] diamond 153 100 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;