RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1126198", tax_clade = "FCB group" and tax_phylum = "Fibrobacterota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fibrobacterota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA1126198 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10485392 10485392 PRJNA1126198_P_NODE_58209_length_385_cov_1.516026_g57492_i0 PRJNA1126198 58209 385 1.516026 5.8367001 Chitinispirillaceae bacterium 2813024 Bacteria Bacteria 106 5.2699999999999994e-24   NR MCX7726137.1 2813024 g57492 i0 69.3 5.91428571428571 75 21 58.4 1 159 383 4 76 MCX7726137.1 nucleotide sugar dehydrogenase [Chitinispirillaceae bacterium] diamond 2277 106 1 Bacteria FCB group Pseudomonadati Fibrobacterota Chitinispirillia Chitinispirillales Chitinispirillaceae   Chitinispirillaceae bacterium
15584175 15584175 PRJNA1126198_P_NODE_239113_length_281_cov_1.427885_g238392_i0 PRJNA1126198 239113 281 1.427885 4.01235685 Pseudomonadati 3379134 Bacteria Bacteria 121 6.989999999999999e-31   NR WP_220386961.1 28122 g238392 i0 76.4 12.5017793594306 72 17 76.9 0 59 274 2 73 WP_220386961.1 DNA polymerase IV [Fibrobacter intestinalis] diamond 3513 122 0.991803278688525 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter intestinalis
28586364 28586364 PRJNA1126198_P_NODE_247807_length_279_cov_0.902913_g247086_i0 PRJNA1126198 247807 279 0.902913 2.51912727 Fibrobacter sp. UWB3 1964357 Bacteria Bacteria 46.2 0.00278   NR WP_088631339.1 1964357 g247086 i0 55 0.43010752688172 40 18 43 0 121 2 1 40 WP_088631339.1 hypothetical protein [Fibrobacter sp. UWB3] diamond 120 46.2 1 Bacteria FCB group Pseudomonadati Fibrobacterota Fibrobacteria Fibrobacterales Fibrobacteraceae Fibrobacter Fibrobacter sp. UWB3

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;