RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA1126198", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA1126198 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1556428 1556428 PRJNA1126198_P_NODE_488282_length_229_cov_5.576923_g487561_i0 PRJNA1126198 488282 229 5.576923 12.77115367 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 422 1.35e-113   NTclustered gi|909719645|gb|KT185625.1| 5778 g487561 i0 100 3.14410480349345 228 0 99 0 2 229 6317 6090 Vermamoeba vermiformis isolate 1 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, internal transcribed spacer 2, and 28S ribosomal RNA gene, complete sequence blastn 720 422 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
22707139 22707139 PRJNA1126198_P_NODE_179418_length_300_cov_1.687225_g178698_i0 PRJNA1126198 179418 300 1.687225 5.061675 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 555 1.7399999999999995e-153   NTclustered gi|300078496|gb|GU001158.1| 5778 g178698 i0 100 91.5166666666667 300 0 100 0 1 300 1221 922 Hartmannella vermiformis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27455 555 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
23982782 23982782 PRJNA1126198_P_NODE_491359_length_227_cov_3.967532_g490637_i0 PRJNA1126198 491359 227 3.967532 9.00629764 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 420 4.81e-113   NTclustered gi|399764177|gb|JQ271688.1| 5778 g490637 i0 100 100 227 0 100 0 1 227 152 378 Hartmannella vermiformis strain ECH26 18S ribosomal RNA gene, partial sequence blastn 22700 420 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;