RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1123686" and tax_phylum = "Rotifera"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Rotifera · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123686 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
20682361 20682361 PRJNA1123686_S_NODE_19397_length_155_cov_12.095238_g19365_i0 PRJNA1123686 19397 155 12.095238 18.7476189 Bdelloidea environmental sample 317506 Rotifera other_Eukaryota 54.7 0.004   NTclustered gi|323803600|gb|HQ175315.1| 317506 g19365 i0 96.875 0.412903225806452 32 1 21 0 9 40 260 229 Uncultured bdelloid rotifer clone 09B_N1_1_65 cytochrome oxidase subunit 1 (cox1) gene, partial cds; mitochondrial blastn 64 54.7 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria       Bdelloidea environmental sample
27639120 27639120 PRJNA1123686_S_NODE_9804_length_190_cov_7.347826_g9772_i0 PRJNA1123686 9804 190 7.347826 13.9608694 Brachionus plicatilis 10195 Rotifera other_Eukaryota 40.8 0.0484   NR RNA22819.1 10195 g9772 i0 37.3 0.805263157894737 51 25 69.5 1 16 147 42 92 RNA22819.1 cornifelin -like protein [Brachionus plicatilis] diamond 153 40.8 1 Eukaryota Opisthokonta Metazoa Rotifera Eurotatoria Ploima Brachionidae Brachionus Brachionus plicatilis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;