RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1123686", tax_clade = "Opisthokonta" and tax_phylum = "Porifera"

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tax_superkingdom 1

tax_phylum 1

  • Porifera · 3 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 3 ✖

bioproject 1

  • PRJNA1123686 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
30986683 30986683 PRJNA1123686_S_NODE_1174_length_322_cov_965.860068_g1142_i0 PRJNA1123686 1174 322 965.860068 3110.06941896 Oopsacas minuta 111878 Porifera other_Eukaryota 106 1.7699999999999998e-24   NR KAI6657944.1 111878 g1142 i0 66 0.875776397515528 94 31 87.6 1 8 289 69 161 KAI6657944.1 Ribosomal protein S14 [Oopsacas minuta] diamond 282 106 1 Eukaryota Opisthokonta Metazoa Porifera Hexactinellida Lyssacinosida Leucopsacidae Oopsacas Oopsacas minuta
31702895 31702895 PRJNA1123686_S_NODE_13237_length_174_cov_9.524138_g13205_i0 PRJNA1123686 13237 174 9.524138 16.57200012 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 67.8 1.32e-11   NR KAI6653080.1 111878 g13205 i0 77.8 71.6896551724138 54 12 93.1 0 13 174 125 178 KAI6653080.1 rRNA 2'-O-methyltransferase fibrillarin isoform X2 [Oopsacas minuta] diamond 12474 68.2 0.994134897360704 Eukaryota Opisthokonta Metazoa Porifera Hexactinellida Lyssacinosida Leucopsacidae Oopsacas Oopsacas minuta
31966703 31966703 PRJNA1123686_S_NODE_1858_length_291_cov_1118.091603_g1826_i0 PRJNA1123686 1858 291 1118.091603 3253.64656473 Oopsacas minuta 111878 Porifera other_Eukaryota 82 8.44e-16   NR KAI6657944.1 111878 g1826 i0 59 0.804123711340206 78 31 80.4 1 25 258 85 161 KAI6657944.1 Ribosomal protein S14 [Oopsacas minuta] diamond 234 82 1 Eukaryota Opisthokonta Metazoa Porifera Hexactinellida Lyssacinosida Leucopsacidae Oopsacas Oopsacas minuta

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;