RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA1123686", tax_clade = "Opisthokonta" and tax_phylum = "Kinorhyncha"

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tax_superkingdom 1

tax_phylum 1

  • Kinorhyncha · 1 ✖

tax_kingdom 1

tax_clade 1

  • Opisthokonta · 1 ✖

bioproject 1

  • PRJNA1123686 · 1 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1555479 1555479 PRJNA1123686_S_NODE_14822_length_168_cov_24.798561_g14790_i0 PRJNA1123686 14822 168 24.798561 41.66158248 Campyloderes sp. HY 2012a 1215689 Kinorhyncha other_Eukaryota 134 4.9000000000000005e-27   NTclustered gi|471434483|dbj|AB738345.1| 1215689 g14790 i0 81.875 77.7440476190476 160 28 95 1 1 159 382 223 Campyloderes sp. HY 2012a gene for 28S ribosomal RNA, partial sequence, specimen_voucher: ICHUM:04287 blastn 13061 134 1 Eukaryota Opisthokonta Metazoa Kinorhyncha Cyclorhagida Kentrorhagata Centroderidae Campyloderes Campyloderes sp. HY 2012a

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;