RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA1123436" and tax_phylum = "Cossaviricota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Cossaviricota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA1123436 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11758213 11758213 PRJNA1123436_P_NODE_40490_length_396_cov_1.458204_g39276_i0 PRJNA1123436 40490 396 1.458204 5.77448784 Turdus naumanni parvoviridae sp. 2794525 Viruses Viruses 60.2 2.27e-4   NTclustered gi|2045611212|gb|MW046482.1| 2794525 g39276 i0 97.222 0.0909090909090909 36 0 9 1 194 228 38 3 MAG: Turdus naumanni parvoviridae sp. isolate thr146par07 genomic sequence, sequence blastn 36 60.2 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Turdus naumanni parvoviridae sp.
12508362 12508362 PRJNA1123436_P_NODE_50170_length_353_cov_1.100000_g48956_i0 PRJNA1123436 50170 353 1.1 3.883 Parvoviridae 10780 Viruses Viruses 54.7 0.009   NTclustered gi|1981818584|gb|MW306773.1| 2810799 g48956 i0 100 0.257790368271955 29 0 8 0 6 34 119 91 Duck-associated ambidensovirus 1 strain s1564, complete genome blastn 91 54.7 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Protoambidensovirus Protoambidensovirus incertum1
30765345 30765345 PRJNA1123436_P_NODE_75734_length_286_cov_1.084507_g74520_i0 PRJNA1123436 75734 286 1.084507 3.10169002 Parvoviridae sp. 1940570 Viruses Viruses 65.5 5.94e-10   NR XNT20792.1 1940570 g74520 i0 83.9 0.325174825174825 31 5 32.5 0 126 34 1 31 XNT20792.1 MAG: NS1 protein [Parvoviridae sp.] diamond 93 65.5 1 Viruses   Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Parvoviridae sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;