RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA1123436" and tax_phylum = "Chytridiomycota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chytridiomycota · 4 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123436 · 4 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
280572 280572 PRJNA1123436_P_NODE_85221_length_268_cov_1.533333_g84007_i0 PRJNA1123436 85221 268 1.533333 4.10933244 Spizellomyces punctatus 109760 Fungi Fungi 189 1.7899999999999996e-43   NTclustered gi|1027029543|ref|XR_001677161.1| 645134 g84007 i0 89.474 41.115671641791 152 12 56 3 1 149 3922 4072 Spizellomyces punctatus DAOM BR117 28S ribosomal RNA (SPPG_11002), rRNA blastn 11019 189 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Spizellomycetales Spizellomycetaceae Spizellomyces Spizellomyces punctatus
1554387 1554387 PRJNA1123436_P_NODE_44762_length_375_cov_2.745033_g43548_i0 PRJNA1123436 44762 375 2.745033 10.29387375 uncultured Lobulomycetales 2020344 Fungi Fungi 556 6.2e-154   NTclustered gi|2465121775|gb|OQ687176.1| 2020344 g43548 i0 93.386 99.4506666666667 378 22 100 3 1 375 521 144 Uncultured Lobulomycetales isolate UMPB-933 small subunit ribosomal RNA gene, partial sequence blastn 37294 556 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Lobulomycetales     uncultured Lobulomycetales
13033322 13033322 PRJNA1123436_P_NODE_38311_length_409_cov_0.916667_g37097_i0 PRJNA1123436 38311 409 0.916667 3.74916803 Synchytrium endobioticum 286115 Fungi Fungi 243 2.1700000000000007e-59   NTclustered gi|530788923|gb|KF160871.1| 286115 g37097 i0 78.469 46.3911980440098 418 56 98 21 1 400 61 462 Synchytrium endobioticum voucher DAOM_229326 28S ribosomal RNA gene, partial sequence; 28S-18S ribosomal RNA intergenic spacer, 18S ribosomal RNA gene, internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 18974 243 1 Eukaryota Opisthokonta Fungi Chytridiomycota Chytridiomycetes Synchytriales Synchytriaceae Synchytrium Synchytrium endobioticum
30638811 30638811 PRJNA1123436_P_NODE_124073_length_242_cov_0.911243_g122859_i0 PRJNA1123436 124073 242 0.911243 2.20520806 Piromyces finnis 1754191 Fungi Fungi 40.8 0.026   NR ORX46833.1 1754191 g122859 i0 72 0.309917355371901 25 7 31 0 3 77 3 27 ORX46833.1 hypothetical protein BCR36DRAFT_296727, partial [Piromyces finnis] diamond 75 40.8 1 Eukaryota Opisthokonta Fungi Chytridiomycota Neocallimastigomycetes Neocallimastigales Neocallimastigaceae Piromyces Piromyces finnis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;