RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA1123436" and tax_phylum = "Candidatus Auribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Candidatus Auribacterota · 6 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA1123436 · 6 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27386494 27386494 PRJNA1123436_P_NODE_120143_length_243_cov_0.905882_g118929_i0 PRJNA1123436 120143 243 0.905882 2.20129326 Candidatus Auribacterota bacterium 2093365 Bacteria Bacteria 112 4.53e-27   NR MCX6339306.1 2093365 g118929 i0 71.3 0.987654320987654 80 22 97.5 1 241 5 71 150 MCX6339306.1 restriction endonuclease subunit S [Candidatus Auribacterota bacterium] diamond 240 112 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota         Candidatus Auribacterota bacterium
27754608 27754608 PRJNA1123436_P_NODE_66944_length_305_cov_0.926724_g65730_i0 PRJNA1123436 66944 305 0.926724 2.8265082 Pseudomonadati 3379134 Bacteria Bacteria 59.7 8.2e-8   NR MCX6356832.1 2093365 g65730 i0 72 1.44590163934426 50 14 49.2 0 156 7 1 50 MCX6356832.1 group II intron reverse transcriptase/maturase [Candidatus Auribacterota bacterium] diamond 441 59.7 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota         Candidatus Auribacterota bacterium
28428348 28428348 PRJNA1123436_P_NODE_96086_length_251_cov_0.865169_g94872_i0 PRJNA1123436 96086 251 0.865169 2.17157419 Candidatus Auribacterota bacterium 2093365 Bacteria Bacteria 152 2.75e-41   NR MCX6339445.1 2093365 g94872 i0 96.4 0.99203187250996006 83 3 99.2 0 1 249 538 620 MCX6339445.1 tetratricopeptide repeat protein [Candidatus Auribacterota bacterium] diamond 249 152 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota         Candidatus Auribacterota bacterium
30986654 30986654 PRJNA1123436_P_NODE_123554_length_242_cov_0.911243_g122340_i0 PRJNA1123436 123554 242 0.911243 2.20520806 Candidatus Auribacterota bacterium 2093365 Bacteria Bacteria 133 2.64e-35   NR MCX6339185.1 2093365 g122340 i0 81.8 0.954545454545455 77 14 95.5 0 6 236 310 386 MCX6339185.1 glutamate 5-kinase [Candidatus Auribacterota bacterium] diamond 231 133 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota         Candidatus Auribacterota bacterium
31840096 31840096 PRJNA1123436_P_NODE_126157_length_241_cov_0.916667_g124943_i0 PRJNA1123436 126157 241 0.916667 2.20916747 Candidatus Auribacterota bacterium 2093365 Bacteria Bacteria 47 7.48e-4   NR MCX6348412.1 2093365 g124943 i0 41 0.759336099585062 61 35 74.7 1 192 13 24 84 MCX6348412.1 hypothetical protein [Candidatus Auribacterota bacterium] diamond 183 47 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota         Candidatus Auribacterota bacterium
32188401 32188401 PRJNA1123436_P_NODE_88418_length_262_cov_1.613757_g87204_i0 PRJNA1123436 88418 262 1.613757 4.22804334 Candidatus Euphemobacter frigidus 3039690 Bacteria Bacteria 102 3.66e-24   NR MDP8215596.1 3039690 g87204 i0 65.1 0.984732824427481 86 29 98.5 1 262 5 136 220 MDP8215596.1 IS1595 family transposase [Candidatus Euphemobacter frigidus] diamond 258 102 1 Bacteria PVC group Pseudomonadati Candidatus Auribacterota Candidatus Erginobacteria Candidatus Erginobacterales Candidatus Erginobacteraceae Candidatus Euphemobacter Candidatus Euphemobacter frigidus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;