RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1123436", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA1123436 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7933043 7933043 PRJNA1123436_P_NODE_61227_length_319_cov_1.540650_g60013_i0 PRJNA1123436 61227 319 1.54065 4.9146735 uncultured Mollicutes bacterium 220137 Bacteria Bacteria 60.2 1.79e-4   NTclustered gi|2187163481|emb|OV788639.1| 220137 g60013 i0 90.909 0.137931034482759 44 4 14 0 276 319 45242 45285 uncultured Mollicutes bacterium isolate min17_bin64 genome assembly, chromosome: 1 blastn 44 60.2 1 Bacteria   Bacillati Mycoplasmatota Mollicutes       uncultured Mollicutes bacterium
20680351 20680351 PRJNA1123436_P_NODE_111717_length_246_cov_0.890173_g110503_i0 PRJNA1123436 111717 246 0.890173 2.18982558 Spiroplasma melliferum 2134 Bacteria Bacteria 56.5 0.002   NTclustered gi|1634056650|gb|CP029202.1| 2134 g110503 i0 92.5 0.16260162601626 40 2 16 1 18 56 483269 483308 Spiroplasma melliferum strain AS576 chromosome, complete genome blastn 40 56.5 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Entomoplasmatales Spiroplasmataceae Spiroplasma Spiroplasma melliferum
30449605 30449605 PRJNA1123436_P_NODE_60753_length_320_cov_2.186235_g59539_i0 PRJNA1123436 60753 320 2.186235 6.995952 Mycoplasmatales bacterium 2023991 Bacteria Bacteria 68.9 5.75e-11   NR HXN54441.1 2023991 g59539 i0 62.5 0.45 48 18 45 0 1 144 251 298 HXN54441.1 reverse transcriptase family protein [Mycoplasmatales bacterium] diamond 144 68.9 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales     Mycoplasmatales bacterium
31270985 31270985 PRJNA1123436_P_NODE_79015_length_280_cov_1.115942_g77801_i0 PRJNA1123436 79015 280 1.115942 3.1246376 Mycoplasma sp. CAG:611_25_7 1897009 Bacteria Bacteria 196 1.35e-61   NR OLA94045.1 1897009 g77801 i0 100 1.99285714285714 93 0 99.6 0 279 1 36 128 OLA94045.1 MAG: hypothetical protein BHW63_00550, partial [Mycoplasma sp. CAG:611_25_7] diamond 558 196 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma sp. CAG:611_25_7

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;