RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA1123436", tax_clade = "Sar" and tax_phylum = "Oomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Oomycota · 4 ✖

tax_clade 1

bioproject 1

  • PRJNA1123436 · 4 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10482402 10482402 PRJNA1123436_P_NODE_106749_length_247_cov_1.655172_g105535_i0 PRJNA1123436 106749 247 1.655172 4.08827484 uncultured Oomycota 179533 SAR_Eukaryotes SAR_Eukaryotes 255 1.59e-63   NTclustered gi|573864535|gb|KF745973.1| 179533 g105535 i0 85.887 100.781376518219 248 26 99 8 1 246 89 329 Uncultured oomycete clone OTU-22 28S ribosomal RNA gene, partial sequence blastn 24893 255 1 Eukaryota Sar   Oomycota         uncultured Oomycota
11233383 11233383 PRJNA1123436_P_NODE_90969_length_258_cov_0.810811_g89755_i0 PRJNA1123436 90969 258 0.810811 2.09189238 Aphanomyces 100860 SAR_Eukaryotes SAR_Eukaryotes 396 9.419999999999995e-106   NTclustered gi|166048041|emb|CU364162.1| 100861 g89755 i0 94.531 99.2093023255814 256 14 99 0 2 257 511 256 Aphanomyces euteiches cDNA blastn 25596 396 1 Eukaryota Sar   Oomycota Saprolegniomycetes Saprolegniales Verrucalvaceae Aphanomyces Aphanomyces euteiches
18132500 18132500 PRJNA1123436_P_NODE_95795_length_251_cov_0.865169_g94581_i0 PRJNA1123436 95795 251 0.865169 2.17157419 Phytophthora sojae 67593 SAR_Eukaryotes SAR_Eukaryotes 69.4 2.26e-7   NTclustered gi|695461128|ref|XM_009539856.1| 67593 g94581 i0 95.455 0.50199203187251 44 0 17 2 8 50 172 130 Phytophthora sojae hypothetical protein partial mRNA blastn 126 69.4 1 Eukaryota Sar   Oomycota Peronosporomycetes Peronosporales Peronosporaceae Phytophthora Phytophthora sojae
28523096 28523096 PRJNA1123436_P_NODE_93327_length_253_cov_1.361111_g92113_i0 PRJNA1123436 93327 253 1.361111 3.44361083 Pythium insidiosum 114742 SAR_Eukaryotes SAR_Eukaryotes 127 6.269999999999999e-32   NR KAJ0412157.1 114742 g92113 i0 79.2 1.73122529644269 77 16 91.3 0 251 21 631 707 KAJ0412157.1 hypothetical protein ATCC90586_005770 [Pythium insidiosum] diamond 438 127 1 Eukaryota Sar   Oomycota Peronosporomycetes Pythiales Pythiaceae Pythium Pythium insidiosum

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;