RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

9 rows where bioproject = "PRJNA1123436", tax_clade = "Sar" and tax_phylum = "Cercozoa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Cercozoa · 9 ✖

tax_clade 1

bioproject 1

  • PRJNA1123436 · 9 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2830423 2830423 PRJNA1123436_P_NODE_45083_length_374_cov_1.189369_g43869_i0 PRJNA1123436 45083 374 1.189369 4.44824006 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 387 8.589999999999998e-103   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g43869 i0 86.376 61.5882352941176 367 35 98 9 10 374 4018 3665 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 23034 387 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
2830645 2830645 PRJNA1123436_P_NODE_56623_length_331_cov_1.748062_g55409_i0 PRJNA1123436 56623 331 1.748062 5.78608522 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 244 4.79e-60   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g55409 i0 95.455 38.6676737160121 154 6 47 1 16 169 3696 3848 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 12799 244 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
19406529 19406529 PRJNA1123436_P_NODE_89596_length_260_cov_1.352941_g88382_i0 PRJNA1123436 89596 260 1.352941 3.5176466 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 180 1.04e-40   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g88382 i0 79.848 25.0884615384615 263 39 99 12 1 257 3746 4000 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 6523 180 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
20681218 20681218 PRJNA1123436_P_NODE_43777_length_380_cov_1.302932_g42563_i0 PRJNA1123436 43777 380 1.302932 4.9511416 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 196 1.58e-45   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g42563 i0 92.086 28.2526315789474 139 11 37 0 4 142 3699 3837 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 10736 196 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
20681357 20681357 PRJNA1123436_P_NODE_51137_length_349_cov_1.750000_g49923_i0 PRJNA1123436 51137 349 1.75 6.1075 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 141 6.840000000000001e-29   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g49923 i0 92.079 13.7277936962751 101 6 28 1 2 100 3737 3837 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 4791 141 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
21956468 21956468 PRJNA1123436_P_NODE_41418_length_391_cov_3.729560_g40204_i0 PRJNA1123436 41418 391 3.72956 14.5825796 Esquamula lacrimiformis 1176540 SAR_Eukaryotes SAR_Eukaryotes 222 2.69e-53   NTclustered gi|409971369|dbj|AB714271.1| 1176540 g40204 i0 91.018 42.7544757033248 167 11 42 4 1 164 3680 3845 Esquamula lacrimiformis gene for 28S ribosomal RNA, partial sequence blastn 16717 222 1 Eukaryota Sar   Cercozoa Imbricatea Thaumatomonadida   Esquamula Esquamula lacrimiformis
21956804 21956804 PRJNA1123436_P_NODE_57958_length_327_cov_10.440945_g56744_i0 PRJNA1123436 57958 327 10.440945 34.14189015 Lotharella oceanica 641309 SAR_Eukaryotes SAR_Eukaryotes 69.4 3.05e-7   NTclustered gi|1009104511|ref|NC_029731.1| 641309 g56744 i0 77.119 0.36085626911315 118 27 36 0 197 314 22583 22466 Lotharella oceanica strain CCMP622 mitochondrion, complete genome blastn 118 69.4 1 Eukaryota Sar   Cercozoa Chlorarachniophyceae     Lotharella Lotharella oceanica
21957137 21957137 PRJNA1123436_P_NODE_74218_length_289_cov_1.004630_g73004_i0 PRJNA1123436 74218 289 1.00463 2.9033807 Paracercomonas marina 372086 SAR_Eukaryotes SAR_Eukaryotes 396 1.0699999999999997e-105   NTclustered gi|88792583|gb|DQ386164.1| 372086 g73004 i0 92.527 97.598615916955 281 14 97 5 1 280 1766 2040 Paracercomonas marina 28S ribosomal RNA gene, partial sequence blastn 28206 396 1 Eukaryota Sar   Cercozoa   Cercomonadida Cercomonadidae Paracercomonas Paracercomonas marina
23982156 23982156 PRJNA1123436_P_NODE_78259_length_281_cov_1.490385_g77045_i0 PRJNA1123436 78259 281 1.490385 4.18798185 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 460 3.629999999999999e-125   NTclustered gi|1915673916|emb|LR867535.1| 404700 g77045 i0 99.603 94.085409252669 252 1 90 0 14 265 253 2 uncultured Cercomonadida partial 18S rRNA gene blastn 26438 460 1 Eukaryota Sar   Cercozoa   Cercomonadida     Cercomonadida environmental sample

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;