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contig_metadata

7 rows where bioproject = "PRJNA1123436", tax_clade = "Methanomada group" and tax_phylum = "Methanobacteriota"

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tax_superkingdom 1

tax_phylum 1

  • Methanobacteriota · 7 ✖

tax_kingdom 1

tax_clade 1

  • Methanomada group · 7 ✖

bioproject 1

  • PRJNA1123436 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3579733 3579733 PRJNA1123436_P_NODE_102643_length_249_cov_0.875000_g101429_i0 PRJNA1123436 102643 249 0.875 2.17875 Methanobrevibacter 2172 Archaea Archaea 444 3.18e-120   NTclustered gi|2791693311|gb|CP144200.1| 2173 g101429 i0 98.795 7.00401606425703 249 3 100 0 1 249 643874 643626 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 1744 444 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
5382059 5382059 PRJNA1123436_P_NODE_111205_length_246_cov_0.890173_g109991_i0 PRJNA1123436 111205 246 0.890173 2.18982558 uncultured Methanobacteriaceae archaeon 176233 Archaea Archaea 78.7 3.67e-10   NTclustered gi|2874253858|emb|OY969914.1| 176233 g109991 i0 90 0.475609756097561 60 6 28 0 142 201 880020 880079 MAG: uncultured Methanobacteriaceae archaeon isolate MFD02416.bin.1.248 genome assembly, chromosome: 1 blastn 117 78.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae   uncultured Methanobacteriaceae archaeon
7407855 7407855 PRJNA1123436_P_NODE_89506_length_260_cov_1.614973_g88292_i0 PRJNA1123436 89506 260 1.614973 4.1989298 Methanobrevibacter 2172 Archaea Archaea 475 1.1899999999999999e-129   NTclustered gi|1294447101|gb|CP017803.1| 2173 g88292 i0 99.615 7.00384615384615 260 1 100 0 1 260 1582271 1582012 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 1821 475 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
7931783 7931783 PRJNA1123436_P_NODE_105767_length_248_cov_0.880000_g104553_i0 PRJNA1123436 105767 248 0.88 2.1824 Methanobrevibacter smithii 2173 Archaea Archaea 449 6.81e-122   NTclustered gi|1294447101|gb|CP017803.1| 2173 g104553 i0 99.593 6.96370967741935 246 1 99 0 2 247 1509650 1509405 Methanobrevibacter smithii strain KB11 chromosome, complete genome blastn 1727 449 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
8683185 8683185 PRJNA1123436_P_NODE_95087_length_251_cov_0.865169_g93873_i0 PRJNA1123436 95087 251 0.865169 2.17157419 Methanobrevibacter 2172 Archaea Archaea 448 2.48e-121   NTclustered gi|2791693311|gb|CP144200.1| 2173 g93873 i0 98.805 7.49800796812749 251 3 100 0 1 251 230934 230684 Methanobrevibacter smithii strain GRAZ-2 chromosome, complete genome blastn 1882 448 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
14309699 14309699 PRJNA1123436_P_NODE_96272_length_251_cov_0.865169_g95058_i0 PRJNA1123436 96272 251 0.865169 2.17157419 Methanobrevibacter smithii 2173 Archaea Archaea 459 1.1499999999999996e-124   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g95058 i0 99.602 7.58964143426295 251 1 100 0 1 251 1387967 1387717 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 1905 459 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii
18130466 18130466 PRJNA1123436_P_NODE_101895_length_249_cov_0.875000_g100681_i0 PRJNA1123436 101895 249 0.875 2.17875 Methanobrevibacter smithii 2173 Archaea Archaea 449 6.840000000000001e-122   NTclustered gi|2188913606|dbj|AP025587.1| 2173 g100681 i0 99.197 13 249 2 100 0 1 249 947657 947905 Methanobrevibacter smithii CE91-St68 DNA, complete genome blastn 3237 449 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobrevibacter Methanobrevibacter smithii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;