RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1123436", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 2 ✖

bioproject 1

  • PRJNA1123436 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21956974 21956974 PRJNA1123436_P_NODE_65978_length_307_cov_1.273504_g64764_i0 PRJNA1123436 65978 307 1.273504 3.90965728 Pseudomonadati 3379134 Bacteria Bacteria 73.6 1.22e-12   NR TLU87805.1 1095 g64764 i0 47.4 1.79804560260586 97 51 94.8 0 293 3 1370 1466 TLU87805.1 MAG: hypothetical protein FDX21_03015 [Chlorobium sp.] diamond 552 73.6 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
29375421 29375421 PRJNA1123436_P_NODE_108509_length_247_cov_0.885057_g107295_i0 PRJNA1123436 108509 247 0.885057 2.18609079 Chlorobaculum sp. 24CR 2508878 Bacteria Bacteria 89.7 2.73e-20   NR WP_129051647.1 2508878 g107295 i0 65.6 0.740890688259109 61 21 74.1 0 23 205 118 178 WP_129051647.1 hypothetical protein [Chlorobaculum sp. 24CR] diamond 183 89.7 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobaculum Chlorobaculum sp. 24CR

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;