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contig_metadata

12 rows where bioproject = "PRJNA1123436", tax_clade = "Discoba" and tax_superkingdom = "Eukaryota"

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tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 12 ✖

tax_clade 1

  • Discoba · 12 ✖

bioproject 1

  • PRJNA1123436 · 12 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
280087 280087 PRJNA1123436_P_NODE_60161_length_321_cov_4.334677_g58947_i0 PRJNA1123436 60161 321 4.334677 13.91431317 Euglena mutabilis 38275 Euglenozoa other_Eukaryota 270 7.64e-68   NTclustered gi|985482797|gb|KT223519.1| 38275 g58947 i0 99.329 84.7227414330218 149 1 90 0 171 319 82357 82505 Euglena mutabilis chloroplast, complete genome blastn 27196 270 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena mutabilis
4106384 4106384 PRJNA1123436_P_NODE_19384_length_604_cov_3.468927_g18189_i0 PRJNA1123436 19384 604 3.468927 20.95231908 Naegleria sp. 37103 Heterolobosea other_Eukaryota 989 0   NTclustered gi|2651357798|gb|PP174311.1| 37103 g18189 i0 96.192 32.4354304635762 604 23 100 0 1 604 3825 3222 Naegleria sp. isolate 33 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 19591 989 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp.
4107456 4107456 PRJNA1123436_P_NODE_76824_length_284_cov_1.118483_g75610_i0 PRJNA1123436 76824 284 1.118483 3.17649172 Trypanosoma theileri 67003 Euglenozoa other_Eukaryota 270 6.65e-68   NTclustered gi|2026667531|dbj|LC618031.1| 67003 g75610 i0 90.338 73.580985915493 207 18 72 2 1 205 5786 5992 Trypanosoma theileri OSK-16 genes for 18S rRNA, ITS1, 5.8S rRNA, ITS2, 28S rRNA, ITS3, ITS4, partial and complete sequence blastn 20897 270 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma theileri
8683044 8683044 PRJNA1123436_P_NODE_75787_length_286_cov_1.084507_g74573_i0 PRJNA1123436 75787 286 1.084507 3.10169002 Leishmania 5658 Euglenozoa other_Eukaryota 213 1.15e-50   NTclustered gi|440222381|gb|JX030049.1| 5659 g74573 i0 85 94.3181818181818 220 22 75 10 68 281 262 48 Leishmania amazonensis isolate LaPH8.rRNA.25 28S ribosomal RNA (LSU-beta), partial sequence blastn 26975 213 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leishmania Leishmania amazonensis
10484137 10484137 PRJNA1123436_P_NODE_87709_length_263_cov_3.226316_g86495_i0 PRJNA1123436 87709 263 3.226316 8.48521108 Naegleria lovaniensis 51637 Heterolobosea other_Eukaryota 390 4.479999999999999e-104   NTclustered gi|2719226838|gb|PP695237.1| 51637 g86495 i0 93.511 10.3155893536122 262 17 99 0 2 263 5546 5807 Naegleria lovaniensis strain TS rDNA-containing extrachromosomal element genomic sequence blastn 2713 390 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria lovaniensis
14308248 14308248 PRJNA1123436_P_NODE_20492_length_584_cov_2.448141_g19287_i0 PRJNA1123436 20492 584 2.448141 14.29714344 Avlakibodo gracilis 2939382 Euglenozoa other_Eukaryota 662 0   NTclustered gi|2231916159|gb|ON375938.1| 2939382 g19287 i0 87.028 100.190068493151 609 51 100 16 1 584 920 1525 Neobodonida sp. AOBelyaev-2022a strain B-75 small subunit ribosomal RNA gene, partial sequence blastn 58511 662 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Avlakibodo Avlakibodo gracilis
16858051 16858051 PRJNA1123436_P_NODE_98594_length_250_cov_0.870056_g97380_i0 PRJNA1123436 98594 250 0.870056 2.17514 Trypanosoma rangeli 5698 Euglenozoa other_Eukaryota 298 2.63e-76   NTclustered gi|1673158204|ref|XM_029381934.1| 5698 g97380 i0 88.571 9.328 245 28 98 0 1 245 293 537 Trypanosoma rangeli ribosomal protein L19-like protein (TraAM80_05039), partial mRNA blastn 2332 298 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma rangeli
18131675 18131675 PRJNA1123436_P_NODE_55575_length_334_cov_8.007663_g54361_i0 PRJNA1123436 55575 334 8.007663 26.74559442 Euglena pseudoviridis 509933 Euglenozoa other_Eukaryota 296 1.32e-75   NTclustered gi|944275091|gb|KT305141.1| 509933 g54361 i0 100 93.6796407185629 160 0 93 0 163 322 1292 1451 Euglena pseudoviridis strain SAG1224-17c large subunit ribosomal RNA gene, partial sequence; chloroplast blastn 31289 296 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Euglena Euglena pseudoviridis
18881620 18881620 PRJNA1123436_P_NODE_99695_length_250_cov_0.870056_g98481_i0 PRJNA1123436 99695 250 0.870056 2.17514 Naegleria 5761 Heterolobosea other_Eukaryota 457 4.1099999999999985e-124   NTclustered gi|2031946985|emb|OD958550.1| 5763 g98481 i0 99.6 42.748 250 1 100 0 1 250 3221 2972 Naegleria fowleri Karachi_NF001 strain blastn 10687 457 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria fowleri
19406002 19406002 PRJNA1123436_P_NODE_62876_length_315_cov_0.958678_g61662_i0 PRJNA1123436 62876 315 0.958678 3.0198357 Neobodo saliens 351712 Euglenozoa other_Eukaryota 473 5.309999999999999e-129   NTclustered gi|225216796|gb|FJ176711.1| 351712 g61662 i0 94.788 144.657142857143 307 11 96 3 14 315 675 981 Neobodo saliens HFCC11 28S ribosomal RNA gene, partial sequence blastn 45567 473 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Neobodonida   Neobodo Neobodo saliens
20155878 20155878 PRJNA1123436_P_NODE_36256_length_421_cov_5.586207_g35042_i0 PRJNA1123436 36256 421 5.586207 23.51793147 Naegleria 5761 Heterolobosea other_Eukaryota 778 0   NTclustered gi|110766914|gb|DQ768722.1| 395911 g35042 i0 100 95.1353919239905 421 0 100 0 1 421 21 441 Naegleria sp. RR11Z/I small subunit ribosomal RNA gene, partial sequence blastn 40052 778 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria sp. RR11Z/I
24506241 24506241 PRJNA1123436_P_NODE_72120_length_293_cov_1.050000_g70906_i0 PRJNA1123436 72120 293 1.05 3.0765 Naegleria clarki 36333 Heterolobosea other_Eukaryota 403 6.51e-108   NTclustered gi|2651357780|gb|PP174296.1| 36333 g70906 i0 91.809 39.4505119453925 293 18 100 6 1 293 4107 3821 Naegleria clarki isolate P2881 small subunit ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and large subunit ribosomal RNA gene, partial sequence blastn 11559 403 1 Eukaryota Discoba   Heterolobosea     Vahlkampfiidae Naegleria Naegleria clarki

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;