RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA1123436", tax_clade = "CRuMs" and tax_superkingdom = "Eukaryota"

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tax_superkingdom 1

  • Eukaryota · 2 ✖

tax_clade 1

  • CRuMs · 2 ✖

bioproject 1

  • PRJNA1123436 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6656678 6656678 PRJNA1123436_P_NODE_107986_length_247_cov_0.885057_g106772_i0 PRJNA1123436 107986 247 0.885057 2.18609079 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 211 3.48e-50   NTclustered gi|300078503|gb|GU001165.1| 238746 g106772 i0 82.353 39.1417004048583 255 33 100 8 1 247 4407 4157 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 9668 211 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis
24505091 24505091 PRJNA1123436_P_NODE_123920_length_242_cov_0.911243_g122706_i0 PRJNA1123436 123920 242 0.911243 2.20520806 Micronuclearia podoventralis 238746 Root_unresolved Root_unresolved 302 1.96e-77   NTclustered gi|300078503|gb|GU001165.1| 238746 g122706 i0 89.627 43.7644628099174 241 20 99 5 1 239 2974 2737 Micronuclearia podoventralis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 10591 302 1 Eukaryota CRuMs       Rigifilida   Micronuclearia Micronuclearia podoventralis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;